Sh_004L21_t000020

Overview
NameSh_004L21_t000020
Unique NameSh_004L21_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L21contigSh_004L21:14917..15573
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L21_g000020Sh_004L21_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L21_p000020Sh_004L21_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L21_t000020 ID=Sh_004L21_t000020|Name=Sh_004L21_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=273bp
ATGGCGTCCATGATAACAGGAGATTTCGTGGAGGCCTACGTACGGAGGAA
CGCCTGCAAAGAGGAGATGAGGAAGGCAGAAGCGAGAACCGCTGGTGGGG
TGGCGGCGGCGGCACAAGAGGAGAAGGCCGGCGCTAGTGCATCGTCGGAG
AAGAAAGCGGCCAAAGAGGCTGCAGCTGGTAGTAGCAAGGGAGAAGGAGG
CAGCGGCCTCTTTGGGCTGGTGAAGAAGAAGGTTCACCCCAAAGTTGGCG
GAAGCACAGGAGCTTCTTCTTGA
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protein sequence of Sh_004L21_p000020

>Sh_004L21_p000020 ID=Sh_004L21_p000020|Name=Sh_004L21_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=91bp
MASMITGDFVEAYVRRNACKEEMRKAEARTAGGVAAAAQEEKAGASASSE
KKAAKEAAAGSSKGEGGSGLFGLVKKKVHPKVGGSTGASS*
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mRNA from alignment at Sh_004L21:14917..15573-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L21_t000020 ID=Sh_004L21_t000020|Name=Sh_004L21_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=657bp|location=Sequence derived from alignment at Sh_004L21:14917..15573- (R570 Sugarcane cultivar)
CAAACGCAACTAGTGAACTAGTACAAGAGAGACGGGCAAGGGGGGAAAAA ACCCTCTCAATAGCTAGGCAGGCTCTTGAGAAGAGGGGAACCCATAGAGA GAAGATCAAGTGAGAAAGAGCAGATATGGCGTCCATGATAACAGGAGATT TCGTGGAGGCCTACGTACGGAGGAACGCCTGCAAAGAGGAGATGAGGAAG GCAGAAGCGAGAACCGCTGGTGGGGTGGCGGCGGCGGCACAAGAGGAGAA GGCCGGCGCTAGTGCATCGTCGGAGAAGAAAGCGGCCAAAGAGGCTGCAG CTGGTAGTAGCAAGGGAGAAGGAGGCAGCGGCCTCTTTGGGCTGGTGAAG AAGAAGGTTCACCCCAAAGTTGGCGGAAGCACAGGAGCTTCTTCTTGAAC TCCTGTAGTATTATGCAGCAGTAGCAAGCTACTAGCTGTACTGCACCCGG TAGGCACTTGCATGGCTGCAGGCATGCATGGAATTTCAGAATTTTACTCC TGTCCATCTTGAAGTCAAGTGGTTTATTTCAGTTCAGACTTTCCTTTTTG TTACTTTCCCTTTCCTCCTCCTTGCTTGAATAAGAAGCTTGCAGGGGAAA CCATGCAGATGTATACACCTGTTTTGTTTGATAAAAAGATAGACGGAAAA TGTTTAT
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Coding sequence (CDS) from alignment at Sh_004L21:14917..15573-

>Sh_004L21_t000020 ID=Sh_004L21_t000020|Name=Sh_004L21_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=273bp|location=Sequence derived from alignment at Sh_004L21:14917..15573- (R570 Sugarcane cultivar)
ATGGCGTCCATGATAACAGGAGATTTCGTGGAGGCCTACGTACGGAGGAA
CGCCTGCAAAGAGGAGATGAGGAAGGCAGAAGCGAGAACCGCTGGTGGGG
TGGCGGCGGCGGCACAAGAGGAGAAGGCCGGCGCTAGTGCATCGTCGGAG
AAGAAAGCGGCCAAAGAGGCTGCAGCTGGTAGTAGCAAGGGAGAAGGAGG
CAGCGGCCTCTTTGGGCTGGTGAAGAAGAAGGTTCACCCCAAAGTTGGCG
GAAGCACAGGAGCTTCTTCTTGA
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