Sh_004L21_t000040

Overview
NameSh_004L21_t000040
Unique NameSh_004L21_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L21contigSh_004L21:34289..35291
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteEPIDERMAL PATTERNING FACTOR-like protein 7
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L21_g000040Sh_004L21_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L21_p000040Sh_004L21_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L21_t000040 ID=Sh_004L21_t000040|Name=Sh_004L21_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=486bp
ATGAGAACGCGGGAGTCCTCTGGTAATTGCCGGAGATGGCGGGCTCCAAC
TCCGACCGCAGCAGCGGTCGTGTTGGTGCTCCTGCTGGTCATCAGTTCGT
CGTCGTCGCACGTTGCCGACGGCGTCAGAACCACACCACGTGCGTCCGGT
CCAGGTGACGCCGGCGTGGTCGACGACGTGGAGGCACCGCCTGCTGCTGG
TGCTCATCACGCAAGCAGCAGGGCAACCTACAAACCAGCAGACCGGACTA
CTGAGGACGAAGGCTCGTTGGTGGTGCTGGAGGAGGAGGATCAGGATCAG
CAGTGGTGGCTGAAGGAGCGCGCGGCGACGGGGTCGCGGCTGCCGGACTG
CGCGCACGCGTGCGGGCCGTGCTCCCCGTGCCGGCGCGTCATTGTGAGCT
TCAGGTGCGCGCTGGCCTCCGAGTCCTGCCCCATCGCCTACCGCTGCATG
TGCCGCGGCAGGTTCTTTCGGGTGCCCTCCCTCTAG
back to top

protein sequence of Sh_004L21_p000040

>Sh_004L21_p000040 ID=Sh_004L21_p000040|Name=Sh_004L21_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=162bp
MRTRESSGNCRRWRAPTPTAAAVVLVLLLVISSSSSHVADGVRTTPRASG
PGDAGVVDDVEAPPAAGAHHASSRATYKPADRTTEDEGSLVVLEEEDQDQ
QWWLKERAATGSRLPDCAHACGPCSPCRRVIVSFRCALASESCPIAYRCM
CRGRFFRVPSL*
back to top

mRNA from alignment at Sh_004L21:34289..35291+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L21_t000040 ID=Sh_004L21_t000040|Name=Sh_004L21_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1003bp|location=Sequence derived from alignment at Sh_004L21:34289..35291+ (R570 Sugarcane cultivar)
GCTCTGATGCACCTGCTGTGTCCTCCTATATATCCGCATGCAAGCACAGG CGTCCCCTCCGAACTCGATCCGTAGCCTGCTGTGTCCTCCTTGGCGTATT GTGTTCTTGCCTTTCTGCTAGCTCGTCGAACCAGAGCTCCTGCTAGGAAG CGAGAAATGAGAACGCGGGAGTCCTCTGGTAATTGCCGGAGATGGCGGGC TCCAACTCCGACCGCAGCAGCGGTCGTGTTGGTGCTCCTGCTGGTCATCA GTTCGTCGTCGTCGCACGTTGCCGACGGCGTCAGAACCACACCACGTAAG TTGATGATCTGAGCTGTACTAACTAATTTTCCCTCTGTCAGTTCAATGCT GTCAGCTTTCATGTTTCAGAACATGGGAAAGCTTGCACAACTTAACTTGC AGCAGTGTCGGTTCGACGTACAGTAATGTAGAGTACATGCACCGTAGTAC TCCTAGGTACTGACGTGTCATGTCGACGTCGCGCGCCTTCGTTACCATCA GATGGCATGGCAGCACATGTGGCATCTGAAAACACGCTGACGTTCTTTTC TTGTTCACATACTCCTACAATGCAACCTGTTTACTCCCTGGGTAACTGAA ACAACAGACAGGCCGGGATCTGACAATGGTTCGTCTTCTCCGTGTGCACC GCGCAGGTGCGTCCGGTCCAGGTGACGCCGGCGTGGTCGACGACGTGGAG GCACCGCCTGCTGCTGGTGCTCATCACGCAAGCAGCAGGGCAACCTACAA ACCAGCAGACCGGACTACTGAGGACGAAGGCTCGTTGGTGGTGCTGGAGG AGGAGGATCAGGATCAGCAGTGGTGGCTGAAGGAGCGCGCGGCGACGGGG TCGCGGCTGCCGGACTGCGCGCACGCGTGCGGGCCGTGCTCCCCGTGCCG GCGCGTCATTGTGAGCTTCAGGTGCGCGCTGGCCTCCGAGTCCTGCCCCA TCGCCTACCGCTGCATGTGCCGCGGCAGGTTCTTTCGGGTGCCCTCCCTC TAG
back to top

Coding sequence (CDS) from alignment at Sh_004L21:34289..35291+

>Sh_004L21_t000040 ID=Sh_004L21_t000040|Name=Sh_004L21_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=486bp|location=Sequence derived from alignment at Sh_004L21:34289..35291+ (R570 Sugarcane cultivar)
ATGAGAACGCGGGAGTCCTCTGGTAATTGCCGGAGATGGCGGGCTCCAAC
TCCGACCGCAGCAGCGGTCGTGTTGGTGCTCCTGCTGGTCATCAGTTCGT
CGTCGTCGCACGTTGCCGACGGCGTCAGAACCACACCACGTGCGTCCGGT
CCAGGTGACGCCGGCGTGGTCGACGACGTGGAGGCACCGCCTGCTGCTGG
TGCTCATCACGCAAGCAGCAGGGCAACCTACAAACCAGCAGACCGGACTA
CTGAGGACGAAGGCTCGTTGGTGGTGCTGGAGGAGGAGGATCAGGATCAG
CAGTGGTGGCTGAAGGAGCGCGCGGCGACGGGGTCGCGGCTGCCGGACTG
CGCGCACGCGTGCGGGCCGTGCTCCCCGTGCCGGCGCGTCATTGTGAGCT
TCAGGTGCGCGCTGGCCTCCGAGTCCTGCCCCATCGCCTACCGCTGCATG
TGCCGCGGCAGGTTCTTTCGGGTGCCCTCCCTCTAG
back to top