Sh_004L21_t000050

Overview
NameSh_004L21_t000050
Unique NameSh_004L21_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1869
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L21contigSh_004L21:36145..41367
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteSomatic embryogenesis receptor kinase-1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L21_g000050Sh_004L21_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L21_p000050Sh_004L21_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L21_t000050 ID=Sh_004L21_t000050|Name=Sh_004L21_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1869bp
ATGGCGGCGTCGCTGAGGTGGTGGTGGTCGGCGGTGGTATTGTCGGTGGT
GGTCGGCGTGAGCCCGGTTGTCGCCAACACGGAGGGTGATGCTCTATACA
GCCTACGACAAAGCCTGAAAGATAACAACAATGTGCTGCAGAGTTGGGAT
CCAACTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGA
TAACAGTGTCATCAGACTCGATCTTGGAAATGCACAACTATCAGGTCCAT
TGGTGCCACAGCTTGGGCAATTGAAAAATATGCAATATCTAGAACTTTAC
AGTAACAACATAAGTGGGCCAATACCACCTGAACTGGGGAACTTAACTAA
CCTGGTCAGTTTGGATCTGTACCTCAACAACTTCACTGGAGGCATTCCTG
ACACCTTGGGCCAACTATCAAAGTTGCGGTTTCTCCGTCTTAATAACAAC
AGTCTTTCTGGCCAAATTCCGGAAACGTTGACCAATATCAACACTCTCCA
AGTTCTGGATCTCTCAAACAACAATCTCTCAGGAGGGGTGCCATCAAGTG
GTTCATTTTCTCTGTTTACACCTATAAGTTTTGCTAACAACCCAAATCTT
TGTGGCCCTGGTACTACAAAGCCTTGTCCTGGGGCTCCTCCATTTTCTCC
ACCCCCTCCATACAATCCCCCATCACCAGCTTCATCAAAAGGCGTGTCCA
GCACTGGAGCAATTGCTGGAGGCGTTGCGGCTGGCACTGCATTTCTGATT
GCTGTGCCTGCTATTGGATACGCATTGTGGCGGAGGCGAAAACCTGAAGA
GCAATTCTTTGATGTCCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGAC
AACTCAAGAGGTTCTCACTGAGAGAGCTTCAAGTCGCCACAGATAATTTT
AACAATAGGAATGTCCTAGGAAGAGGTGGTTTTGGAAAGGTGTACAAAGG
GAGACTGTCGGATGGTTCACTGGTAGCGGTGAAGAGATTAAAGGAGGAAC
GCACCCCTGGCGGAGAGCTCCAGTTCCAAACAGAAGTTGAATTGATTAGC
ATGGCAGTGCACAGGAATCTGCTTCGGCTCCGTGGATTCTGCATGACTCC
TACAGAGCGGTTGCTAGTATATCCATACATGGCTAACGGGAGTGTTGCAT
CGCGCCTTCGAGAACGCACGCCAAATGATCCCCCTCTTGAATGGGAAACA
AGGGCCAGAATCGCACTGGGATCAGCCAGAGGTCTCTCTTACTTGCACGA
CCACTGTGATCCCAAGATCATTCACCGCGACGTGAAAGCCGCCAACATCC
TGTTGGACGAAGACTTTGAAGCCGTGGTGGGTGACTTTGGCCTCGCCAAG
CTCATGGATTACAAGGACACCCACGTGACGACTGCTGTACGTGGGACGAT
CGGCCACATCGCCCCCGAGTATCTGTCCACCGGAAAGTCCTCTGAGAAGA
CGGACGTCTTCGGCTACGGGATCATGCTTCTGGAACTCATCACTGGGCAG
AGGGCGTTTGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCT
TGACTGGGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTTGTGG
ACCCGGACCTGCAGGGCCGGTACGCGGACCAGGAGGTGGAGTCGCTGATC
CAGGTGGCGCTGCTGTGCACGCAGGGGTCCCCGATGGAGCGGCCCAAGAT
GTCGGAGGTGGTGCGGATGCTGGAGGGCGATGGGCTGGCGGAGCGATGGG
AGCAGTGGCAGAAGGTGGAGGTGATGCGGCAGGAGGCGGAACTCGCCCCG
CGCCACAACGACTGGATCGTCGACTCCACCTACAGCCTCAGGGCCGTCGA
ACTGTCTGGCCCGAGGTAG
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protein sequence of Sh_004L21_p000050

>Sh_004L21_p000050 ID=Sh_004L21_p000050|Name=Sh_004L21_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=623bp
MAASLRWWWSAVVLSVVVGVSPVVANTEGDALYSLRQSLKDNNNVLQSWD
PTLVNPCTWFHVTCNPDNSVIRLDLGNAQLSGPLVPQLGQLKNMQYLELY
SNNISGPIPPELGNLTNLVSLDLYLNNFTGGIPDTLGQLSKLRFLRLNNN
SLSGQIPETLTNINTLQVLDLSNNNLSGGVPSSGSFSLFTPISFANNPNL
CGPGTTKPCPGAPPFSPPPPYNPPSPASSKGVSSTGAIAGGVAAGTAFLI
AVPAIGYALWRRRKPEEQFFDVPAEEDPEVHLGQLKRFSLRELQVATDNF
NNRNVLGRGGFGKVYKGRLSDGSLVAVKRLKEERTPGGELQFQTEVELIS
MAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERTPNDPPLEWET
RARIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAK
LMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQ
RAFDLARLANDDDVMLLDWVKALLKEKKLEQLVDPDLQGRYADQEVESLI
QVALLCTQGSPMERPKMSEVVRMLEGDGLAERWEQWQKVEVMRQEAELAP
RHNDWIVDSTYSLRAVELSGPR*
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mRNA from alignment at Sh_004L21:36145..41367-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L21_t000050 ID=Sh_004L21_t000050|Name=Sh_004L21_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=5223bp|location=Sequence derived from alignment at Sh_004L21:36145..41367- (R570 Sugarcane cultivar)
TTTCGACCCCCGAGAGGCGGGTCGGGCGCCGGAGGGATGGCGGCGTCGCT GAGGTGGTGGTGGTCGGCGGTGGTATTGTCGGTGGTGGTCGGCGTGAGCC CGGTTGTCGCCAACACGGAGGGTATGCGTACGCCACTGCTTCATGATATC TGTGGTTTATTTTCTTCATAGTTTGATGAGTAGCCCGCAGCGGAGCGAAT TTCCTTCTAGGGGGATAATGGCTGAAAATCTGGGGATGGTGTCCAGAAAT CTAGTGTTTGTTAGCGTTCTACAGGCCTCTGTTGATGGGCGGGGACTGAA CAGGGGATGAAACGATAGCCTGTAGTTCTCATTTCCAGCGCTTTGACGGA TTGCTTTGGGGGGCGCGGTGTTTGTCTCTCCTAGTGTTTTTGTCATTTTG TACTATATATACGGCAATGTTTGTATGACAGGCGTTGTTTTGTTACATCT GGAAAGGTTGGTTGCACAAACCTGGAAGGGCAATTCGTTCTGGAACAAAT GCGGTCTATGCACAGAAGTGTAGATTCTGGTTTCTACTCGTGTCACCGTC TAGAACTATTTTGGGCCTCAAGGTTCCAAAGGAACTATTTTAGGCTCTGT CGAAATTGTTGCCTTTAAGTTTTTTCTATGAAGGTGCATATGCAGGGCTT ATTTATTTATTTTTTTCTGATGCAAAACTTTGGTCTTTGATTCACTACTA CACAGTAAATTTTCATTCCATTTCACCATTGAATCTGAACTAAGATGATT GTTTTTGTTTATTTGGCTAAAGATAGAATTAGTACTCATGGAAGCTGGAG GAAAGAAATTCTGATTACTGAACCTTATCTGTTGGGTTGGGAGATGGGGA GATCACTATACTTAGTTATAATTGTCTCATTAATTTGTTCAGGCATCATA TATGGACTAATATATTAACGGTACGTTGTTAACGAACAACCTGTACTTTC TATCTAAATAAAGCGGTGTCATTTAGAATGAACTGAAGCTACATAACGAA AAAAATGAATGCGTACGTTACTTTCTTAAAACTGAGCATCCTACGGACGT GCAAACTAATTGCGAAGAATCGGAAAGCATGGCTTAATCATTAAGAGTGC ATTGTTTAGAGTGTTTTTTTTACCATTCTTCCTAGTACACATGTGGAAAG AAACCGCATTGCCTTAAATGCTAGTGATTTTTACATGGTGGCTGTATCCT TGAAATGGATAGTAACGTTTGGGTATGCACTCATGATTAAAAGATGATAC TACCAAGGTAACCGAACCCGTATAAGAGTAATTACTACTCTAGATGCTAG TCATATTGTGTTGAATCCATGATGCTTTACATTTGATACGCTTTTTTTAC CTATTGAAAAAGGTATTGTCTGCCGAAATAAAAGATGTGCATAAGTCAAA ATAAAGACAAGCGTTTAACCACATATAAGAACATTACTATATTAACGGCA TATTAATGAAGGGCAAAGCTTATGCATCCTCTTAAATTTCTAACGGGTAC ATTATTGCTTGTGATGATACCTCAATGGCAGGTGATGCTCTATACAGCCT ACGACAAAGCCTGAAAGATAACAACAATGTGCTGCAGAGTTGGGATCCAA CTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGATAAC AGTGTCATCAGACTGTAAGTTGATCAAAGATCTTTTTGTTTATTCTCCCT TTGAGGTGAAAGACTGACCATTTGAATATGTACTGTCTCCCTTTTGCTAG CGATCTTGGAAATGCACAACTATCAGGTCCATTGGTGCCACAGCTTGGGC AATTGAAAAATATGCAATATCTGTAAGTTTCCACATCCATGATTTTGATA ATTGAGCTAATAGTTTCATGATGCCATATAGGTGCATCTTTCACTCCCAA TATTGGTTTAGCATAATTGCTTAGTTTTTGTGGAGCTTCTGAAACATGTG CGCATGCTTTTGGGTGCATTATGTCTCCTTTTGTCTGACGCCCAACAGTT CTCACTTCTCTTACTATTTCTTACCATATATATTTTCCAATAAATATTGT ACCCTCCAATAAATATATAGGTCACCTTCGTGTTGAATTTATGTTTCATC ATTTTGCAACAGAGAACTTTACAGTAACAACATAAGTGGGCCAATACCAC CTGAACTGGGGAACTTAACTAACCTGGTCAGTTTGGATCTGTACCTCAAC AACTTCACTGGAGGCATTCCTGACACCTTGGGCCAACTATCAAAGTTGCG GTTTCTGTAAGTTAATTCAATTGCCCTGGTTACAGAAGTGATATGTTCAT GTGGCATTGTCCATCAATATATGTTGATCCTGTTAGTATAAATTATCTGA TTGTTATTCGGTCATGATTTATCTGACAATGATGTGAAGAAATAGAAAGT TCTTACAGAACAGTAATATATGCATGATGTGCCCAACAATAGGTTTGCAC AAAGTTATCCTCCAAATGCACTCTTCACTTTGTGATAGTAGATACTAAGG TTTTCATAACATCAATCATCCACTTGTCCATTTGTGTCTTTTTCTTTTGA TTTTTAAAATGAAAGGCAAAATCCATTGTCTAGTTCTTGCCTTGTTACTT ATTACATTATCTCTAAGCTTATCTATTGACTATTGGAAAGATTGTAACGT TTTTATTTCTTTGGATATCTACTTGCAAGGACAGCCGTCTTAATAACAAC AGTCTTTCTGGCCAAATTCCGGAAACGTTGACCAATATCAACACTCTCCA AGTTCTGTAAGTTACCTGTTGCCCTTTTAGCTGTTCAGGATGTTAGATGA CAGCAAAAAGTGTTTTGAAAATCTTGCAGGGATCTCTCAAACAACAATCT CTCAGGAGGGGTGCCATCAAGTGGTTCATTTTCTCTGTTTACACCTATAA GGTAATTTCTGGATGAATTTGGATGCTTAATTGCATCTTCTGATGCAGTT CTCCTGCCAGTTGAAAACAAAAACCTGTGTCTTCTGATGTTGACAATTCT AACCTTTTTGTCATAGTTTTGCTAACAACCCAAATCTTTGTGGCCCTGGT ACTACAAAGCCTTGTCCTGGGGCTCCTCCATTTTCTCCACCCCCTCCATA CAATCCCCCATCACCAGCTTCATCAAAAGGTACGGTGATTGGCTGTACAT TCTGTCATATCATGCTACTGTTTGAGATATGCATGAGAGTGAAGCACTGA TATGATCAAACTATGGTACATGACATATCCTAACTGTGTTAATTCTGTTC CCTCAGGCGTGTCCAGCACTGGAGCAATTGCTGGAGGCGTTGCGGCTGGC ACTGCATTTCTGATTGCTGTGCCTGCTATTGGATACGCATTGTGGCGGAG GCGAAAACCTGAAGAGCAATTCTTTGATGTCCCTGGTCGGTATTATATAC CACTGTGCGGTTGTTGTCATCTGTGCTATTCATTTCATTTATATGCTCTC ATTTCGATTCAGCTGAGGAGGATCCTGAAGTTCACCTTGGACAACTCAAG AGGTTCTCACTGAGAGAGCTTCAAGTCGCCACAGATAATTTTAACAATAG GAATGTCCTAGGAAGAGGTGGTTTTGGAAAGGTGTACAAAGGGAGACTGT CGGATGGTTCACTGGTAGCGGTGAAGAGATTAAAGGAGGAACGCACCCCT GGCGGAGAGCTCCAGTTCCAAACAGAAGTTGAATTGATTAGCATGGCAGT GCACAGGAATCTGCTTCGGCTCCGTGGATTCTGCATGACTCCTACAGAGC GGTTGCTAGTATATCCATACATGGCTAACGGGAGTGTTGCATCGCGCCTT CGAGGTACCTGATTCTTTCTCACAGCTCAAATCTTTTCTTCTGCATTTAA TTGGAAACAAAGTGCTATAAATTTGTGCCAAAAGCATAAAACCATTTTTA CTTTCTTTGTTTTCTAGTCCCAGCTTAGTTTGGATAGTTCTGATTTCATT CCTGATGCTTTGATTTTGTAGAACGCACGCCAAATGATCCCCCTCTTGAA TGGGAAACAAGGGCCAGAATCGCACTGGGATCAGCCAGAGGTCTCTCTTA CTTGCACGACCACTGTGATCCCAAGATCATTCACCGCGACGTGAAAGCCG CCAACATCCTGTTGGACGAAGACTTTGAAGCCGTGGTGGGTGACTTTGGC CTCGCCAAGCTCATGGATTACAAGGACACCCACGTGACGACTGCTGTACG TGGGACGATCGGCCACATCGCCCCCGAGTATCTGTCCACCGGAAAGTCCT CTGAGAAGACGGACGTCTTCGGCTACGGGATCATGCTTCTGGAACTCATC ACTGGGCAGAGGGCGTTTGACCTCGCTCGTCTCGCGAACGATGACGACGT CATGCTCCTTGACTGGGTAAGTAAAGTACTGTACACCATGCTCTGGCTTC GTTAAATGCTTGAAAGTACTCACTCCATTCCAAATTATAAGACATTCTAA GAATCTTAGAGAGTCAAAGTATCTTAAGTTTGACCAAAATTATAGAGAAA ATTACAAAAATTTATAACATCAAATAGATATACTATGAAAATATAATCAA TGAAGAATCTAATGATACTTAATTGGTGTCATAAATATTATTATCTTATC ATATAAATTTGGTCAAACTTGAGAACTTGAGATTCTTTTGACTCTCCAAG ATTCTTGGAATGCCTTATAATTTGGGATGGAGGAAGTACCTGTGACAGGA ATGGAAAGAAATGAAGAAACTGGTGTTATTGTTGTGGTTGCACAGGTGAA GGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTTGTGGACCCGGACCTGC AGGGCCGGTACGCGGACCAGGAGGTGGAGTCGCTGATCCAGGTGGCGCTG CTGTGCACGCAGGGGTCCCCGATGGAGCGGCCCAAGATGTCGGAGGTGGT GCGGATGCTGGAGGGCGATGGGCTGGCGGAGCGATGGGAGCAGTGGCAGA AGGTGGAGGTGATGCGGCAGGAGGCGGAACTCGCCCCGCGCCACAACGAC TGGATCGTCGACTCCACCTACAGCCTCAGGGCCGTCGAACTGTCTGGCCC GAGGTAGGCGATGACTGATGCGGAGGTAGATGATCGTCGTGAAAATTCCT TGTCTGTGAATATGACAGCAGGTAGTTTGGTGGTTGGTCCTGAATGATAG CTGCGAAATTGTAGCTGGAATTGTGCACTCGTGTCCTCACCTGACTTCTG TAAGTTTTGGTTTTTCTAATTAG
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Coding sequence (CDS) from alignment at Sh_004L21:36145..41367-

>Sh_004L21_t000050 ID=Sh_004L21_t000050|Name=Sh_004L21_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=1869bp|location=Sequence derived from alignment at Sh_004L21:36145..41367- (R570 Sugarcane cultivar)
ATGGCGGCGTCGCTGAGGTGGTGGTGGTCGGCGGTGGTATTGTCGGTGGT
GGTCGGCGTGAGCCCGGTTGTCGCCAACACGGAGGGTGATGCTCTATACA
GCCTACGACAAAGCCTGAAAGATAACAACAATGTGCTGCAGAGTTGGGAT
CCAACTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGA
TAACAGTGTCATCAGACTCGATCTTGGAAATGCACAACTATCAGGTCCAT
TGGTGCCACAGCTTGGGCAATTGAAAAATATGCAATATCTAGAACTTTAC
AGTAACAACATAAGTGGGCCAATACCACCTGAACTGGGGAACTTAACTAA
CCTGGTCAGTTTGGATCTGTACCTCAACAACTTCACTGGAGGCATTCCTG
ACACCTTGGGCCAACTATCAAAGTTGCGGTTTCTCCGTCTTAATAACAAC
AGTCTTTCTGGCCAAATTCCGGAAACGTTGACCAATATCAACACTCTCCA
AGTTCTGGATCTCTCAAACAACAATCTCTCAGGAGGGGTGCCATCAAGTG
GTTCATTTTCTCTGTTTACACCTATAAGTTTTGCTAACAACCCAAATCTT
TGTGGCCCTGGTACTACAAAGCCTTGTCCTGGGGCTCCTCCATTTTCTCC
ACCCCCTCCATACAATCCCCCATCACCAGCTTCATCAAAAGGCGTGTCCA
GCACTGGAGCAATTGCTGGAGGCGTTGCGGCTGGCACTGCATTTCTGATT
GCTGTGCCTGCTATTGGATACGCATTGTGGCGGAGGCGAAAACCTGAAGA
GCAATTCTTTGATGTCCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGAC
AACTCAAGAGGTTCTCACTGAGAGAGCTTCAAGTCGCCACAGATAATTTT
AACAATAGGAATGTCCTAGGAAGAGGTGGTTTTGGAAAGGTGTACAAAGG
GAGACTGTCGGATGGTTCACTGGTAGCGGTGAAGAGATTAAAGGAGGAAC
GCACCCCTGGCGGAGAGCTCCAGTTCCAAACAGAAGTTGAATTGATTAGC
ATGGCAGTGCACAGGAATCTGCTTCGGCTCCGTGGATTCTGCATGACTCC
TACAGAGCGGTTGCTAGTATATCCATACATGGCTAACGGGAGTGTTGCAT
CGCGCCTTCGAGAACGCACGCCAAATGATCCCCCTCTTGAATGGGAAACA
AGGGCCAGAATCGCACTGGGATCAGCCAGAGGTCTCTCTTACTTGCACGA
CCACTGTGATCCCAAGATCATTCACCGCGACGTGAAAGCCGCCAACATCC
TGTTGGACGAAGACTTTGAAGCCGTGGTGGGTGACTTTGGCCTCGCCAAG
CTCATGGATTACAAGGACACCCACGTGACGACTGCTGTACGTGGGACGAT
CGGCCACATCGCCCCCGAGTATCTGTCCACCGGAAAGTCCTCTGAGAAGA
CGGACGTCTTCGGCTACGGGATCATGCTTCTGGAACTCATCACTGGGCAG
AGGGCGTTTGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCT
TGACTGGGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTTGTGG
ACCCGGACCTGCAGGGCCGGTACGCGGACCAGGAGGTGGAGTCGCTGATC
CAGGTGGCGCTGCTGTGCACGCAGGGGTCCCCGATGGAGCGGCCCAAGAT
GTCGGAGGTGGTGCGGATGCTGGAGGGCGATGGGCTGGCGGAGCGATGGG
AGCAGTGGCAGAAGGTGGAGGTGATGCGGCAGGAGGCGGAACTCGCCCCG
CGCCACAACGACTGGATCGTCGACTCCACCTACAGCCTCAGGGCCGTCGA
ACTGTCTGGCCCGAGGTAG
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