Sh_005F05_contig-1_t000010

Overview
NameSh_005F05_contig-1_t000010
Unique NameSh_005F05_contig-1_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length933
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_005F05_contig-1contigSh_005F05_contig-1:8859..10071
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteHypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_005F05_contig-1_g000010Sh_005F05_contig-1_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_005F05_contig-1_p000010Sh_005F05_contig-1_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_005F05_contig-1_t000010 ID=Sh_005F05_contig-1_t000010|Name=Sh_005F05_contig-1_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=933bp
ATGGAGGACTCGTATCGTGAGGCGATTTGGAGGAAAAAGGGTCGTCCTAG
AGAGATGTACCCCGACGTGTCTTGCAAGGATGCGCCCGTTCCTCCCGAGG
AACCTTTCCCTAACTGTGACTGTGGTCATCCGGCGCACGTGAGCCAGTCG
AGACATCCAGATACTGCGGCTCGTTGCTTCTACACATGTTATAGTTGTAG
CCCATACTTCCGGTGCATTTTCTTCCAATGGATCGACGGTCCGGACAAGT
TTGACCTAAGGATTCTCCTTTTCTACCCCGGCGTTGATCATTGCAAGCGT
GAGGTGTTTACTCGCTGGGTTCCGCCCCCTTCTAACCCTCCTCCTATGAC
GGAGGAAGAGAAGGCCGTAGCATCGGCACGGCGGCTCGAGGATCCTCCAA
AGTGCCTTTGCGGAGAGCAAGCCGTGATAAACCCACGCAATGAACAAGAG
TTCATTTGTCCTCTACGACATGAGGATCATGATTTTCCAAAGTGTCGTTT
CAAGGAATGGGTCTATGGTCCAAAGAGCCATTGGCCGGAGCCGGAGAAGA
ATGAGGAGGTGCCAGACTGGAAGAAGAAGAGGAGGTCTATTGCGCCTCCT
GTGATGTGCAAATGTGGTGTTGAAGCTAGCTACGGCCTTTTCCCTTCAGG
CCTTGGGATTGGGCACTTCTGTGGCCACATGATCGATTATGACGAGAGCA
CTCAGAAATGCAAATGGGAATCATATGATGATGTGTATAAGTTCAAGGAT
GAGTATAAGACAATGGTAGCACTTCGCAAGATGAGAGGATATCCTGCAAA
CTACGTCACTGATTTCGTTAAGAACCATAAGAAGAAAATGCTACGACGGG
CCCAAGACCTGCGTGTTCGTAACCCGGAGAGTATTGCGTGGAAGAAGTGG
TACGAGCAAAAGAAGGATGTAGAGGAGTACTAG
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protein sequence of Sh_005F05_contig-1_p000010

>Sh_005F05_contig-1_p000010 ID=Sh_005F05_contig-1_p000010|Name=Sh_005F05_contig-1_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=311bp
MEDSYREAIWRKKGRPREMYPDVSCKDAPVPPEEPFPNCDCGHPAHVSQS
RHPDTAARCFYTCYSCSPYFRCIFFQWIDGPDKFDLRILLFYPGVDHCKR
EVFTRWVPPPSNPPPMTEEEKAVASARRLEDPPKCLCGEQAVINPRNEQE
FICPLRHEDHDFPKCRFKEWVYGPKSHWPEPEKNEEVPDWKKKRRSIAPP
VMCKCGVEASYGLFPSGLGIGHFCGHMIDYDESTQKCKWESYDDVYKFKD
EYKTMVALRKMRGYPANYVTDFVKNHKKKMLRRAQDLRVRNPESIAWKKW
YEQKKDVEEY*
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mRNA from alignment at Sh_005F05_contig-1:8859..10071+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_005F05_contig-1_t000010 ID=Sh_005F05_contig-1_t000010|Name=Sh_005F05_contig-1_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1213bp|location=Sequence derived from alignment at Sh_005F05_contig-1:8859..10071+ (R570 Sugarcane cultivar)
ATGGAGGACTCGTATCGTGAGGCGATTTGGAGGAAAAAGGGTCGTCCTAG AGAGATGTACCCCGACGTGTCTTGCAAGGATGCGCCCGTTCCTCCCGAGG AACCTTTCCCTAACTGTGACTGTGGTCATCCGGCGCACGTGAGCCAGTCG AGACATCCAGATACTGCGGCTCGTTGCTTCTACACATGTTATAGTTGTAG CGTAAGTAATTGTGCCCTTTGTTTTTCTTATTGGTTTCTGATGTTGTATT CGCGATGAGATAATTCAAACTTTTTTGTAGCCATACTTCCGGTGCATTTT CTTCCAATGGATCGACGGTCCGGACAAGTTTGACCTAAGGATTCTCCTTT TCTACCCCGGCGTTGATCATTGCAAGCGTGAGGTGTTTACTCGCTGGGTT CCGCCCCCTTCTAACCCTCCTCCTATGACGGAGGAAGAGAAGGCCGTAGC ATCGGCACGGCGGCTCGAGGATCCTCCAAAGTGCCTTTGCGGAGAGCAAG CCGTGATAAACCCACGCAATGAACAAGAGTTCATTTGTCCTCTACGACAT GAGGTAATGTTTGAGTGAACCTTGGAATGTCATGTCCTATATGTGTGTTT TACTGTTTTGATTTTGTAGGATCATGATTTTCCAAAGTGTCGTTTCAAGG AATGGGTCTATGGTCCAAAGAGCCATTGGCCGGAGCCGGAGAAGAATGAG GAGGTGCCAGACTGGAAGAAGAAGAGGAGGTCTATTGCGCCTCCTGTGAT GTGCAAATGTGGTGTTGAAGCTAGCTACGGCCTTTTCCCTTCAGGCCTTG GGATTGGGCACTTCTGTGGCCACATGATCGATTATGACGAGGTTTGCTAG GACTGTTGACACTTAGTGCTAATGTTTTATTTTGTTTGCTTTGGTACGCT AACTTTGTATTCATCTATTTGTTGCAACAGAGCACTCAGAAATGCAAATG GGAATCATATGATGATGTGTATAAGTTCAAGGATGAGTATAAGACAATGG TAGCACTTCGCAAGATGAGAGGATATCCTGCAAACTACGTCACTGATTTC GTTAAGAACCATAAGAAGAAAATGCTACGACGGGCCCAAGACCTGCGTGT TCGTAACCCGGAGAGTATTGCGTGGAAGAAGTGGTACGAGCAAAAGAAGG ATGTAGAGGAGTACTAGGCACGGAAGGCTGAAGAGGATGCAAGGAAGGCT GCAGAGGAGGCTG
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Coding sequence (CDS) from alignment at Sh_005F05_contig-1:8859..10071+

>Sh_005F05_contig-1_t000010 ID=Sh_005F05_contig-1_t000010|Name=Sh_005F05_contig-1_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=933bp|location=Sequence derived from alignment at Sh_005F05_contig-1:8859..10071+ (R570 Sugarcane cultivar)
ATGGAGGACTCGTATCGTGAGGCGATTTGGAGGAAAAAGGGTCGTCCTAG
AGAGATGTACCCCGACGTGTCTTGCAAGGATGCGCCCGTTCCTCCCGAGG
AACCTTTCCCTAACTGTGACTGTGGTCATCCGGCGCACGTGAGCCAGTCG
AGACATCCAGATACTGCGGCTCGTTGCTTCTACACATGTTATAGTTGTAG
CCCATACTTCCGGTGCATTTTCTTCCAATGGATCGACGGTCCGGACAAGT
TTGACCTAAGGATTCTCCTTTTCTACCCCGGCGTTGATCATTGCAAGCGT
GAGGTGTTTACTCGCTGGGTTCCGCCCCCTTCTAACCCTCCTCCTATGAC
GGAGGAAGAGAAGGCCGTAGCATCGGCACGGCGGCTCGAGGATCCTCCAA
AGTGCCTTTGCGGAGAGCAAGCCGTGATAAACCCACGCAATGAACAAGAG
TTCATTTGTCCTCTACGACATGAGGATCATGATTTTCCAAAGTGTCGTTT
CAAGGAATGGGTCTATGGTCCAAAGAGCCATTGGCCGGAGCCGGAGAAGA
ATGAGGAGGTGCCAGACTGGAAGAAGAAGAGGAGGTCTATTGCGCCTCCT
GTGATGTGCAAATGTGGTGTTGAAGCTAGCTACGGCCTTTTCCCTTCAGG
CCTTGGGATTGGGCACTTCTGTGGCCACATGATCGATTATGACGAGAGCA
CTCAGAAATGCAAATGGGAATCATATGATGATGTGTATAAGTTCAAGGAT
GAGTATAAGACAATGGTAGCACTTCGCAAGATGAGAGGATATCCTGCAAA
CTACGTCACTGATTTCGTTAAGAACCATAAGAAGAAAATGCTACGACGGG
CCCAAGACCTGCGTGTTCGTAACCCGGAGAGTATTGCGTGGAAGAAGTGG
TACGAGCAAAAGAAGGATGTAGAGGAGTACTAG
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