Sh_005H13_contig-1_t000020

Overview
NameSh_005H13_contig-1_t000020
Unique NameSh_005H13_contig-1_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1692
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_005H13_contig-1contigSh_005H13_contig-1:14065..15984
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePutative protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_005H13_contig-1_g000020Sh_005H13_contig-1_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_005H13_contig-1_p000020Sh_005H13_contig-1_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_005H13_contig-1_t000020 ID=Sh_005H13_contig-1_t000020|Name=Sh_005H13_contig-1_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1692bp
ATGGCGTCGCTGTTCCGTTCGATCCTCCGGCTATTCCAAGCGAAGGCGCC
GGGGCCGGAGCTTCTGGATCTCAGCGACGATCTCCTCCGGGAGATCCTCC
TGCGGATCGGCTTCCCCGCCGACGTCATCCGCGCCTCCGCCGCATGCGTC
ACATTCCGCCGCCTCGTCGCCGAACCCTCCTTCTTCTGCCGTTACCGCTC
CCTCCATCCTCCGCTACTCCTCGGCTTCCTCGAAACCAGAACCAAATTGT
TCCAGCCGGCCGAGGCGCCCCACCCCAACGCTCCTGCCGCCCGCGCTCTC
GCCCGCACCGCGAGCTTCTCCTCCGAGGATCGGCTCCCTCGCCTCCACAT
AGTTTCGTACTGCACTGGCCCTGGGAGATCTGTGACCTCCGCGAAGGCCG
TGTCCTCCTCAAGTGCAGACCTCTGGGATTTACATTCAGGGTCGCCTGCT
GCTACCTCGCATTTCCGACGACCTACTCGCCTCCGTTCAGAAGAGGAGGA
TGAGAGGTCGTTCAGAGTGATCGGCATGGCCATGACGGGTTGCATGACGA
AGCTAGCGGTATTTGTCTTCTCCTCGAGCTCTGGGCGCTGGAGTCTCGGT
ACGTCTACAAATTTGGATACTCTTAATGTACCACCAGACATAAAGATGCT
GAAACAGCCCCATCTTTCTCATGGCTGTTTCTTCTGGAAAGTGGAGAAGA
AGGACAAGTTGCTCAAGCTTGACATGAGCATAATGGAGCTCTCCACATAC
GACCTCCCGCCTGGTCACCATGAGCGCTATACTGTCGTTGCAGAGGCAGG
TGAAGGAAGACTTGCGTTGTTTAGCTGCCCACGCTCTTCTGAAGAAACAT
ATGTGGATTATTACACCAGCATTATGCAAACCAAGAGCGACAGGGACAAG
GAGTGGCAGATGATAACCATAATCCCACTTCCCCCCAATCATCGGTATGA
GATTTGTGGTGCAGCTGACGGATACATTTTCCTATTAGGATTTCCAAAAT
TCCCAGGACCGGGTCATGCAGTTTGTTTATCCCTCGAGGTTAAGAATTTG
AGGATTGAGAGGGTGTGTTCTGCAATGCGCCGAAGTGGTGTCCTGCACCC
GTATTTCGGGGCACATTGCCCGATCAAATCTGTGCCATTTGTCTTCTCTT
CAGGCTCTGGTGTATGGAGTGTAAGTACTACGTGGAATGATTACTTAGGA
GGCTCCATACTTCATTTCCCCTGCTATGTGTATGGCTGCATCTACTGGAA
AATGATACACATCAACATGTTGTACAAGCTCGACATCAACGCGATGGAGT
TCTCCACCGTTGACCTCCCGCCTCATTACAAAAAGCGAGATGTTATCATT
TTGGAGGCAGGAGAAGGAAGGGTTGGGGTGTTTAGTCTTGTTACGTTTAG
CAAGGCTGTGTATTATGCTATTCAGCAAAAGGAGGGCAAGATTGCCGATG
ACTGCCACACAGAAACTATAATCCACTTACCTGGTCATTATCATTTCATC
ATGGTTGGTGCAGCTGAAGGGTACATCTTCTTTGTAGCCTTACCAAAAGA
CCCCATGGTAAATGCAGCAGCAGCAAGCTTCTCACTTCAGGTGAAGACAT
TGAAGATTGAGATGGTCTGTCGGATGATGTTCGAGTCATGTTATCAACCA
TATTTCGGGTTCCCACCATCCATGTCGCCAAGAAGGATATGA
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protein sequence of Sh_005H13_contig-1_p000020

>Sh_005H13_contig-1_p000020 ID=Sh_005H13_contig-1_p000020|Name=Sh_005H13_contig-1_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=564bp
MASLFRSILRLFQAKAPGPELLDLSDDLLREILLRIGFPADVIRASAACV
TFRRLVAEPSFFCRYRSLHPPLLLGFLETRTKLFQPAEAPHPNAPAARAL
ARTASFSSEDRLPRLHIVSYCTGPGRSVTSAKAVSSSSADLWDLHSGSPA
ATSHFRRPTRLRSEEEDERSFRVIGMAMTGCMTKLAVFVFSSSSGRWSLG
TSTNLDTLNVPPDIKMLKQPHLSHGCFFWKVEKKDKLLKLDMSIMELSTY
DLPPGHHERYTVVAEAGEGRLALFSCPRSSEETYVDYYTSIMQTKSDRDK
EWQMITIIPLPPNHRYEICGAADGYIFLLGFPKFPGPGHAVCLSLEVKNL
RIERVCSAMRRSGVLHPYFGAHCPIKSVPFVFSSGSGVWSVSTTWNDYLG
GSILHFPCYVYGCIYWKMIHINMLYKLDINAMEFSTVDLPPHYKKRDVII
LEAGEGRVGVFSLVTFSKAVYYAIQQKEGKIADDCHTETIIHLPGHYHFI
MVGAAEGYIFFVALPKDPMVNAAAASFSLQVKTLKIEMVCRMMFESCYQP
YFGFPPSMSPRRI*
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mRNA from alignment at Sh_005H13_contig-1:14065..15984-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_005H13_contig-1_t000020 ID=Sh_005H13_contig-1_t000020|Name=Sh_005H13_contig-1_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1920bp|location=Sequence derived from alignment at Sh_005H13_contig-1:14065..15984- (R570 Sugarcane cultivar)
ATGGCGTCGCTGTTCCGTTCGATCCTCCGGCTATTCCAAGCGAAGGCGCC GGGGCCGGAGCTTCTGGATCTCAGCGACGATCTCCTCCGGGAGATCCTCC TGCGGATCGGCTTCCCCGCCGACGTCATCCGCGCCTCCGCCGCATGCGTC ACATTCCGCCGCCTCGTCGCCGAACCCTCCTTCTTCTGCCGTTACCGCTC CCTCCATCCTCCGCTACTCCTCGGCTTCCTCGAAACCAGAACCAAATTGT TCCAGCCGGCCGAGGCGCCCCACCCCAACGCTCCTGCCGCCCGCGCTCTC GCCCGCACCGCGAGCTTCTCCTCCGAGGATCGGCTCCCTCGCCTCCACAT AGTTTCGTACTGCACTGGCCCTGGGAGATCTGTGACCTCCGCGAAGGCCG TGTCCTCCTCAAGTGCAGACCTCTGGGATTTACATTCAGGGTCGCCTGCT GCTACCTCGCATTTCCGACGACCTACTCGCCTCCGTTCAGGTTCAGCGAT GTAACATTCCATGTTTCGAGGCCTTCCTTGTCCCTTCTTCTGCAGAAGAG GAGGATGAGAGGTCGTTCAGAGTGATCGGCATGGCCATGACGGGTTGCAT GACGAAGCTAGCGGTATTTGTCTTCTCCTCGAGCTCTGGGCGCTGGAGTC TCGGTACGTCTACAAATTTGGATACTCTTAATGTACCACCAGACATAAAG ATGCTGAAACAGCCCCATCTTTCTCATGGCTGTTTCTTCTGGAAAGTGGA GAAGAAGGACAAGTTGCTCAAGCTTGACATGAGCATAATGGAGCTCTCCA CATACGACCTCCCGCCTGGTCACCATGAGCGCTATACTGTCGTTGCAGAG GCAGGTGAAGGAAGACTTGCGTTGTTTAGCTGCCCACGCTCTTCTGAAGA AACATATGTGGATTATTACACCAGCATTATGCAAACCAAGAGCGACAGGG ACAAGGAGTGGCAGATGATAACCATAATCCCACTTCCCCCCAATCATCGG TATGAGATTTGTGGTGCAGCTGACGGATACATTTTCCTATTAGGATTTCC AAAATTCCCAGGACCGGGTCATGCAGTTTGTTTATCCCTCGAGGTTAAGA ATTTGAGGATTGAGAGGGTGTGTTCTGCAATGCGCCGAAGTGGTGTCCTG CACCCGTATTTCGGGTACCCACCACCCATGTCACCGAAAGTCATACCAAG CGATACCGGCTTCTGCCCCCCATACCCGACAACCTCGCCTCCGTCCACGT CCATCTGCAAAATTGTCAATCTTTCGAGGCCTTCTTTGCACCTATTGGAG AAGAGGAGGATAATACATCGTTCAGAGTGATCGGCAGGGCACATTGCCCG ATCAAATCTGTGCCATTTGTCTTCTCTTCAGGCTCTGGTGTATGGAGTGT AAGTACTACGTGGAATGATTACTTAGGAGGCTCCATACTTCATTTCCCCT GCTATGTGTATGGCTGCATCTACTGGAAAATGATACACATCAACATGTTG TACAAGCTCGACATCAACGCGATGGAGTTCTCCACCGTTGACCTCCCGCC TCATTACAAAAAGCGAGATGTTATCATTTTGGAGGCAGGAGAAGGAAGGG TTGGGGTGTTTAGTCTTGTTACGTTTAGCAAGGCTGTGTATTATGCTATT CAGCAAAAGGAGGGCAAGATTGCCGATGACTGCCACACAGAAACTATAAT CCACTTACCTGGTCATTATCATTTCATCATGGTTGGTGCAGCTGAAGGGT ACATCTTCTTTGTAGCCTTACCAAAAGACCCCATGGTAAATGCAGCAGCA GCAAGCTTCTCACTTCAGGTGAAGACATTGAAGATTGAGATGGTCTGTCG GATGATGTTCGAGTCATGTTATCAACCATATTTCGGGTTCCCACCATCCA TGTCGCCAAGAAGGATATGA
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Coding sequence (CDS) from alignment at Sh_005H13_contig-1:14065..15984-

>Sh_005H13_contig-1_t000020 ID=Sh_005H13_contig-1_t000020|Name=Sh_005H13_contig-1_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=1692bp|location=Sequence derived from alignment at Sh_005H13_contig-1:14065..15984- (R570 Sugarcane cultivar)
ATGGCGTCGCTGTTCCGTTCGATCCTCCGGCTATTCCAAGCGAAGGCGCC
GGGGCCGGAGCTTCTGGATCTCAGCGACGATCTCCTCCGGGAGATCCTCC
TGCGGATCGGCTTCCCCGCCGACGTCATCCGCGCCTCCGCCGCATGCGTC
ACATTCCGCCGCCTCGTCGCCGAACCCTCCTTCTTCTGCCGTTACCGCTC
CCTCCATCCTCCGCTACTCCTCGGCTTCCTCGAAACCAGAACCAAATTGT
TCCAGCCGGCCGAGGCGCCCCACCCCAACGCTCCTGCCGCCCGCGCTCTC
GCCCGCACCGCGAGCTTCTCCTCCGAGGATCGGCTCCCTCGCCTCCACAT
AGTTTCGTACTGCACTGGCCCTGGGAGATCTGTGACCTCCGCGAAGGCCG
TGTCCTCCTCAAGTGCAGACCTCTGGGATTTACATTCAGGGTCGCCTGCT
GCTACCTCGCATTTCCGACGACCTACTCGCCTCCGTTCAGAAGAGGAGGA
TGAGAGGTCGTTCAGAGTGATCGGCATGGCCATGACGGGTTGCATGACGA
AGCTAGCGGTATTTGTCTTCTCCTCGAGCTCTGGGCGCTGGAGTCTCGGT
ACGTCTACAAATTTGGATACTCTTAATGTACCACCAGACATAAAGATGCT
GAAACAGCCCCATCTTTCTCATGGCTGTTTCTTCTGGAAAGTGGAGAAGA
AGGACAAGTTGCTCAAGCTTGACATGAGCATAATGGAGCTCTCCACATAC
GACCTCCCGCCTGGTCACCATGAGCGCTATACTGTCGTTGCAGAGGCAGG
TGAAGGAAGACTTGCGTTGTTTAGCTGCCCACGCTCTTCTGAAGAAACAT
ATGTGGATTATTACACCAGCATTATGCAAACCAAGAGCGACAGGGACAAG
GAGTGGCAGATGATAACCATAATCCCACTTCCCCCCAATCATCGGTATGA
GATTTGTGGTGCAGCTGACGGATACATTTTCCTATTAGGATTTCCAAAAT
TCCCAGGACCGGGTCATGCAGTTTGTTTATCCCTCGAGGTTAAGAATTTG
AGGATTGAGAGGGTGTGTTCTGCAATGCGCCGAAGTGGTGTCCTGCACCC
GTATTTCGGGGCACATTGCCCGATCAAATCTGTGCCATTTGTCTTCTCTT
CAGGCTCTGGTGTATGGAGTGTAAGTACTACGTGGAATGATTACTTAGGA
GGCTCCATACTTCATTTCCCCTGCTATGTGTATGGCTGCATCTACTGGAA
AATGATACACATCAACATGTTGTACAAGCTCGACATCAACGCGATGGAGT
TCTCCACCGTTGACCTCCCGCCTCATTACAAAAAGCGAGATGTTATCATT
TTGGAGGCAGGAGAAGGAAGGGTTGGGGTGTTTAGTCTTGTTACGTTTAG
CAAGGCTGTGTATTATGCTATTCAGCAAAAGGAGGGCAAGATTGCCGATG
ACTGCCACACAGAAACTATAATCCACTTACCTGGTCATTATCATTTCATC
ATGGTTGGTGCAGCTGAAGGGTACATCTTCTTTGTAGCCTTACCAAAAGA
CCCCATGGTAAATGCAGCAGCAGCAAGCTTCTCACTTCAGGTGAAGACAT
TGAAGATTGAGATGGTCTGTCGGATGATGTTCGAGTCATGTTATCAACCA
TATTTCGGGTTCCCACCATCCATGTCGCCAAGAAGGATATGA
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