Sh_005H13_contig-1_t000030

Overview
NameSh_005H13_contig-1_t000030
Unique NameSh_005H13_contig-1_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_005H13_contig-1contigSh_005H13_contig-1:17167..17843
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteOrganelle RRM domain-containing protein 2, mitochondrial
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_005H13_contig-1_g000030Sh_005H13_contig-1_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_005H13_contig-1_p000030Sh_005H13_contig-1_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_005H13_contig-1_t000030 ID=Sh_005H13_contig-1_t000030|Name=Sh_005H13_contig-1_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=330bp
ATGTGTGAAACTAGGAATGTGGGTATATATTGTGGTAGTAGTAACAGAGG
CATGTATGCAGGGTTAAATAAACGCACAACATCCAATGGACTTAAGGAAG
CATTTTCGAAATTTGGTCAGGTTATTGAAGCAAGAGTAATCACTGATAGA
ATATCTGGATACTCTAGAGGATTTGGCTTTGTCAAATATGCGACTGTACA
AGAAGCTGGTGAGGCCATAAAGGGCATGGATGGAAAGTTCCTTGATGGTT
GGGTTATTTTCGCTGAGTATGCCAAGCAAAGAGAAGCCACACAACCATCA
CAAGGAGCACCCTATGAATACTCTAGCTAA
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protein sequence of Sh_005H13_contig-1_p000030

>Sh_005H13_contig-1_p000030 ID=Sh_005H13_contig-1_p000030|Name=Sh_005H13_contig-1_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=110bp
MCETRNVGIYCGSSNRGMYAGLNKRTTSNGLKEAFSKFGQVIEARVITDR
ISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDGWVIFAEYAKQREATQPS
QGAPYEYSS*
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mRNA from alignment at Sh_005H13_contig-1:17167..17843+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_005H13_contig-1_t000030 ID=Sh_005H13_contig-1_t000030|Name=Sh_005H13_contig-1_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=677bp|location=Sequence derived from alignment at Sh_005H13_contig-1:17167..17843+ (R570 Sugarcane cultivar)
ATGTGTGAAACTAGGAATGTGGGTATATATTGTGGTAGTAGTAACAGAGG CATGTATGCAGGGTTAAATAAACGCACAACATCCAATGGACTTAAGGAAG CATTTTCGAAATTTGGTCAGGTTATTGAAGGTATATATTGAATTATTGCT CAGCTTTTTCTTCAAGTGCTGATTCCATATTCGATGTGATGAAGCAACAC TGTGTATGCAGCAAGAGTAATCACTGATAGAATATCTGGATACTCTAGAG GATTTGGCTTTGTCAAATATGCGACTGTACAAGAAGCTGGTGAGGCCATA AAGGGCATGGATGGAAAGGTGAGTGAATGTGGTTGATTGCAATTAGTTTT CCAAGTTCACTGTTTTATTCATGAAAGACGTTAACCACATTGAATGTTCC TGATAATCCTAAATGTAGAAGACATCAGAAATATGAACATGTCAAAATCG TCTTTTCATGACAACCAAAGAACGGGTGTATACCCTATTAACTGATATAT AATGTCTTACGTTTTAATTTTGGAAGCATTGTCTATTCGGCCTTTTTTTT AATTTTCTCCTCACACAACTATATCTTCCTGCAGTTCCTTGATGGTTGGG TTATTTTCGCTGAGTATGCCAAGCAAAGAGAAGCCACACAACCATCACAA GGAGCACCCTATGAATACTCTAGCTAA
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Coding sequence (CDS) from alignment at Sh_005H13_contig-1:17167..17843+

>Sh_005H13_contig-1_t000030 ID=Sh_005H13_contig-1_t000030|Name=Sh_005H13_contig-1_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=330bp|location=Sequence derived from alignment at Sh_005H13_contig-1:17167..17843+ (R570 Sugarcane cultivar)
ATGTGTGAAACTAGGAATGTGGGTATATATTGTGGTAGTAGTAACAGAGG
CATGTATGCAGGGTTAAATAAACGCACAACATCCAATGGACTTAAGGAAG
CATTTTCGAAATTTGGTCAGGTTATTGAAGCAAGAGTAATCACTGATAGA
ATATCTGGATACTCTAGAGGATTTGGCTTTGTCAAATATGCGACTGTACA
AGAAGCTGGTGAGGCCATAAAGGGCATGGATGGAAAGTTCCTTGATGGTT
GGGTTATTTTCGCTGAGTATGCCAAGCAAAGAGAAGCCACACAACCATCA
CAAGGAGCACCCTATGAATACTCTAGCTAA
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