Sh_005M20_t000030

Overview
NameSh_005M20_t000030
Unique NameSh_005M20_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_005M20contigSh_005M20:24408..31544
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to H0818H01.1 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_005M20_g000030Sh_005M20_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_005M20_p000030Sh_005M20_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_005M20_t000030 ID=Sh_005M20_t000030|Name=Sh_005M20_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=393bp
ATGGCGAGCTCGCTGGCCCGCCTAGGAGCGGCGCTGCCGCGCGCGCGCCC
ACGCCCACGCTTCGCGGCCCGAGCCCTGCCACCGGGGCGGTGGGACGCCG
CCGCGCTCGGCGCCTCCCGCCGCGCCGCGCTGAACGCTTACAGGTGCCAA
GTCCATTCCGACATTAAAGTAGCCCCTACATCGGACTTGAAGGACGGTGG
CAAATCTGAAGCTTGGAGGATCAAGATGCTCTATGACGGTGATTGCCCTC
TCTGTATGCGTGAGGCATTTAGAAAACTGTACGAGGAAGTAGGACTTGGA
TGGGTTTATGCTGTTACTAAGTATGAGCCTCTACCATGGCAAATGCAGTA
TATGGCGTGTGGGCGAAATACCGTATGCAAATTACAGGTATAG
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protein sequence of Sh_005M20_p000030

>Sh_005M20_p000030 ID=Sh_005M20_p000030|Name=Sh_005M20_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=131bp
MASSLARLGAALPRARPRPRFAARALPPGRWDAAALGASRRAALNAYRCQ
VHSDIKVAPTSDLKDGGKSEAWRIKMLYDGDCPLCMREAFRKLYEEVGLG
WVYAVTKYEPLPWQMQYMACGRNTVCKLQV*
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mRNA from alignment at Sh_005M20:24408..31544+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_005M20_t000030 ID=Sh_005M20_t000030|Name=Sh_005M20_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=7137bp|location=Sequence derived from alignment at Sh_005M20:24408..31544+ (R570 Sugarcane cultivar)
ATGGCGAGCTCGCTGGCCCGCCTAGGAGCGGCGCTGCCGCGCGCGCGCCC ACGCCCACGCTTCGCGGCCCGAGCCCTGCCACCGGGGCGGTGGGACGCCG CCGCGCTCGGCGCCTCCCGCCGCGCCGCGCTGAACGGTAAGAGCATGCTA CCCACACACCAATTTCGCTGTTACTGTTAGTGGTGAGGGCTGAGGGGACG TGGGATTGGGTGGATCGTCGTGCAGTGCTTACTCATGAATCCTCTTGTGA TCGAGCCGGATGCTTCGATCGGACCTAGGAGGTTCAGGATGTTGGTATTT GTTCTTGGCGAGGGGAACCTATGTCACTTCTTACCTTTTATTCTGCGTGC CTTTGATCTCACGAATTTTACTGCATTCTGTCTCGTTGGGGGATAATGCG CGTGCAAGTGCAGCGTGATATTGAGAATTTGAGGTGTGAACTCAAATGAG TAGCATTTTGGGCTGCCAAACTACCAGAAATGTTCTGTTAGGCCTGTGCT TTTATGCAGTATAAGATCAGGTTATTAAGTACGAATTTGTACATCAGCTT ACAGGTGCCAAGTCCATTCCGACATTAAAGTAGCCCCTACATCGGACTTG AAGGACGGTGGCAAATCTGAAGCTTGGAGGATCAAGATGCTCTATGACGG TGATTGCCCTCTCTGTATGCGTGAGGTATGTTGCGCTAGAACTCTACGAT GCAGCTTCTGGAAGAACATAGCCTCATTTTCCAATAAGGCAATGATTAAT GAGCAAGTTGAACTAATGGGCACATGTCACCGGTTGATGGCATTGCTGAT TGTATAACAGGCAGTATGGTTAATTCATACTGCGTTCACTAGTTTTTTCT CACCCGGTTGTGGAAACTGATCTTCTGCATCTATTTGGTATCCTAGGGGC ACCATTCAATTACCTTTAATATTTTAAGTAATGATTGTCTGATTCCTCTT TTATTAGTTCTTTGAGTTCCATTTCCAGCTAGCTGATCTTGATTCCTAAT CAACAGCTGAGAGTAGGCAGCCATGAGGCTGTGACAAAAAAAGAGTACAA ATTATTGTTGGAGTATATGTAGGCCCATGAGGCCATGTTGGAGTATATGT AGGCCCATGAGGCCAAGGCCCATGTGGCCCATGTATGGAGACTATATAGC TACCCTTCTAGGGTTAGCCAAGTAATGGATTCACTTTCTCCAACATGGTA ATCAGAGCTTAGGGTTAGGTTCCTCTTCCCCTGCCTCCCAGCCGCCGCCA CCCTGCTGGTGCCGCCCGCCGGCCCAGCCACCATGGCCGGCGGCCCTCCT CTTCCCCCCTCTCTCTATTCCCACTTCCCCTCCTCTTCCTCTCCCACCTG GGCCCAAATCCTGGCCGATGCAGCCGCTGCTGCCTCTCCCAGCGCCGCTG CTGCAGCCCACCCGCCCAGACCCGGCGCGCCCCCTCTGGCCGCCCCTCTT CCCGCCGGCCAGTACCTGGCCGCCGGCCAACCTCTTCCCGCCGGCCAGCA CCTGGCCGCCGGCCACCCTCTCCCCGCCGGCCAACACCTGGCCGCCGGCC ACCCCCTGCCTGCTGGCGGCTACCCTCTGGCCGGCGGGCAGCCCCTGCAG CAGCGCCCCTCCTCCCCCTTCCCACCTGGGGCTGCGGCTCCTCCTCCTGA TGCCGCCACTGCCCAAGCCCTTGCCGCCTCCTCTGATCTGGGCACGGTGG GGGATGGAACCGAGGATGCAGCGCCGGCAGGGGTAGTTCAGCCACTCCTC TCCACTGGCGACCCCGCTGGTGCCGCTACCGGTGCTGCTGCTCCTTCTCT GGACCTTCTCGGTCTCGGTGGCTCTCATCCTTTGCGCGCCCCGGGGCCCG ATTCCACTCTCGCTGCCGCCCTCGTGGCTGCCCGTGCTGCTGCCGCGGAA GGCCAAGCTCGTGTGCGTGCGGCGGCTTTCGTGTGGGAGCGCGAGCGCGA CGCGGCCGACACTTTGGCTCGCCAGATCGCCGAGGCGGAGCAGCTCCTTG CTCCACCCGCCTCCCGGGACGTCGGTGCCACCTCTGCCTCGCCCAGACGT CCCATCCACCACACCACCGTCCTCTGGCATGATCCGGCGGACCCGCTCGT GGCCCAGCTCCACTACCAGGCCGGGGGGGTTCAGAACATTCGCCTTCTCG TCCCGGTCGTCCTCGAGCCGGAGTCGCCCTCCTACGCCCGCTGGAGAGAT CTGGTGGTTCTCACCCTTCGCCGCTACGCCCTCGACGACCACGTCCTCGT CGACGTCTCGGTCGCCGTCCAGACGCCGTCGTGGCTCCGTCTCGACAGCA TCGTCCTCTCCTGGATCTTGGGGACGATCTCTCTGGACCTCCACGACCTC GTCCGCACCTCCCCTGACGCGCGTCGGGCATGGCTTGCCCTTGAGGGCCA GTTCCTGGGCAACGCCGAGGCCCGGGCTCTGCGCCTCGACGCGAGCTTCC GCACCTTCGTCCAGGGTGACCTCTCCGTCGGGGAGTTCTGTCGTCGGATG AAGGCCATGGCTGACTCACTGGGGGACCTCGGGTGGCCCGTGGAGGATCG CATCTTGGTCCTCAACGTCCTCCGGGGGCTCAGCGACCGCTACGCCCACC TGCGGACGTGGATCACCCGTCAGAGGCCCTTCCCCACCTTCCTGGAGGTC CGTGACGATCTTGTCATGGAGGAGCTCACGCAGGGCCTCCAGCCGGGTTA TACTGCTTCCCCGGGGGCCTCCTCGACGGCGCTGGCCGCTACCTCGCCGC GCCCGTCTGGTTCACGTCCGTCTGCTCCACCGCCGTCGTCTCTTCTGGGT CCCCCTCCCTCCGGGCCGAGCGGAGGTGGGGGGGGTCGTGGCGGACGTCG TCGCCGCGGAGGGGGTCGCGGGGGTGGCCGAGGCGCACCTCCACAAGCCC CGGCACCTGGTGGCCCACAGGGGGGGCACCATGGCCCTCCTTCCAGCACC CGTGGTCTGGGCGCATCTCCATGTGGCCCTACCACGCCACCGGGACCGTC TCGCGTCCACCGGTGGCCATGCTCACCGGCACACCTCCCGCTGGTCCTCT CGGCGGCTTCCCTGCTCCACCGCCGGCTGCTTCGTGGGTTCCTCCTTCCG GACCTTCCGGACCTCCACCGGGGGTCGCCGGATGGGACCAGACGGCCCTG GCTCACTCGTTCTCCACCTTGGGTCTGACACCTCCGGTTGGACCCGAGTG GATCGCCGATTCGGGGGCTACCTACCACACCACTCCTGACCCCGGTATAC TTTCGTCGATTCACTCTCCCTCTTCCTCTCTTCCTTCGTCCATTATGGTC GCAAATGGTTCTTGTATTCCAGTCTCATCTGTGGGTACCGCCGGTGCTCA TGGCTCCTTTCGCCTTCCTGATGTTCTTGTGGCTCCTTCCATGGTTCATA ACCTTCTTTCTATTCGTCGTTTTACAGCTGACAATTCTTGTTCTGTGGAA TTTGACTCTTCTGGTCTTACTGTAAAGGATTTGGCTTCCCGGCGACCTCT GCTCCGATGTGACAGCACCGGGCCCCTTTACACCCTTCGCTTCCCGGCGG CGCATTCGTCTTCTTCGCCGTCCCTTTTGTCAGCTGCCTTCGCCGCTTCT ACTTCCTCCACTACTTGGCACCGGCGCCTCGGCCATCCTGGACGTGATGT CCTGATACAGCTCAGTCGTAGCTCTGGTCTTCCATGTACTCGAGCTCATG ATGAGCAACTGTGTCATGCGTGCCAATTGGGCCGTCATGTTCGTCTTCCT TTTTCTCGTTCTTCTTCACATGCGGCCCGCATTTTTGATCTTGTACATTG CGACCTATGGACATCTCCTGTTATCAGTATTTCTGGTTATAAGTACTATC TTGTGGTTGTTGATGATTTTTCGCATTACTCATGGACCTTTCCTCTACGT GCGAAGTCGGATACTTTTACCACGCTCCTTCACTTCTTTACTTGGGTGTC TACTCAGTTCGGTCTCACCATCAAGGCCGTCCAGTGTGACAACGGTCGCG AGTTTGATAACTCCACCTCCCGAGCTTTCTTCCTCTCTCACGGTGTTCAG TTGCGCATGTCTTGCCCATACACCTCCTCGCAGAATGGCAAGGCAGAGCG GATGATTCGCACCACCAACGACACCGTGAGGACTCTTCTGTTTCAGGCCT CTCTTCCTGCCCGCTTCTGGGCTGAGGGCCTGCACACCTCCACATACCTT CTTAACCGCCTTCCTTCTGCTGCCTGTCCCGCTCCCACCCCTCACCACGC CCTCTTCGGTACCCCGCCTCGGTACGATCACCTCCGCGTGTTTGGGTGTG CTTGTTACCCCAACACTGCCGCCACCTCTTCTCACAAGCTGGACCCTCGA TCCACGCTCTGTGTCTTCCTCGGTTACTCCCCGGATCACAAGGGGTACCG ATGCTTCGACCTTACCTCACGACGTGTTCTCATCTCGCGCCATGTGGTGT TCGATGAGTCCGTCTTTCCCTTTTCCGGCACCTCTACTTCTCCGGTCCCC GACCCACCCACCATTTTTCCCACTGATCCGGTGGTCCAGCCACCTTTCTT GTGGTCTCCTGCAGGTACCGCTTCACCGCGCTCCGCGCCGGCCCCCGGTC CCGGCAACCCTGCGAGTTCGGGCCCCTCGTCCTCCGGTGCGGCCCCGTCT CCTTCCGTTGGTGCCGACCCGGGGCCTCCGTCCCCCGTTTCGGCCCCAGG GGGGTCGTGCCGGTTGCCGACGCCGGATCCTGCCTCGGCACCCGCCCCGG CGCCTCCGTCGAGGTTCGCCGCGCCGGTACGGGTTTACCAGCGCAGGCTG CGGCCACCGCCGCAGCCTGTCCCTTCTCCACCAGGGACACCGACACCACC GCCACTGTCTCCGCCGATCCGTGGCACCCCGCAGGTCTACCACCCGCCGC TGCTTCACCGACACCCGCGGCATGTTCACCCGATGGTGACACGACACGCG GCGGGCACCCTGCCGCCTCGTGTCCTCGAGGCTTCGACCGGCGACGTGGT GGTCTCTCCGGTACCCTCCTCCGTCCGCGACGCACTGCTGGACCCTCACT GGCGCCGCGCGATGGAAGAGGAGTACACCGCGCTGCTCGCCAACCAGACA TGGGAGTTGGTGCCCCGGCCGCCGGGCGCCAATGTCGTCACCGGCAAGTG GATTTGGACTCACAAGCGCCGAGCGGACGGCTCTCTCGAGCGCTACAAGG CTCGGTGGGTCCTCCGGGGTTTCACTCAGCGCCCCGGTGTCGACTACGAT GAGACCTTCAGCCCGGTGGTCAAGCCGGCCACAGTCCGTACAGTACTATC GCTGGCACTTGCTCGGTCTTGGCCCGTCCACCAGCTGGATGTCAAGAACG CCTTCCTCCACGGCCTTCTCACTGAGACGGTGTACTGCAGTCAGCCGGCG GGGTTCGTCGACACCACCCGTCCTGATATGGTCTGCCGGCTCAACAGGTC CCTCTACGGCCTCAAGCAGGCACCTCGGGCGTGGAACCACCGGTTCGCTA CTTTCTTGCTGACCCTGGGATTCGTGGAGGCCAAGTCTGATACGTCCCTG TTCGTCTACCACCGTGGAGCCGACACTGCATACTTGCTGCTCTATGTTGA TGACATTGTCCTCACCGCCTCCAGCGAGCCACTTCTCCGGCGGATCATTG CAGCTCTCCAGCAGGAGTTTGCGATGAAGGACCTGGGTGAGCTCCACCAC TTCCTCGGTGTCACTGTTGAGCACCGTCCTGCTGGGCTCCTTCTTCATCA GCGGCAGTACACTCGGGATATCCTGGAGCGGGCTGGGATGTCTGACTGCA AGCCCTGCTCCACCCCAGTCGACACTCAGGGCAAGCTGTCGGAGGCTGAG GGACCTCCGGTGGCCGACCCCACTGCGTACAGGAGTCTTGCCGGGGCTCT TCAGTACCTCACCTTCACCCGGCCGGACATCACATATGCAGTTCAGCAGG TCTGCCTCCACATGCATGATCCCCGGGAGCCTCACCTCACGGCTCTCAAG CGTCTCCTCCGCTACCTCCGGGGCACACTCGACTACGGCCTCCTCCTACA CCGGGCCTCCTCCACCGACCTCGTTGTCTACACCGACGCTGACTGGGCCG GGTGCCCGGATACTCGCCGCTCCACCTCCGGCTACGCCGTCTTCCTGGGC GGCAACCTGGTGTCTTGGTCGTCCAAGCGCCAGCCGGTGGTCTCCCGGTC CAGTGCCGAGGCGGAGTACCGCGCCATGGCTAACGGGGCTTAGTGCCAGA TAAACTGTTGGATAGTTAAATCAGACTAGGCTGACTGTCTGAACATTTTT GCAGTAAATGAAGGGAATGACCAATTGAGTTACATGTTATTAATGAATGA CTAGATGTTTCTTTTACATAATACTGCAATACATCTGTTTTCCTTGTGTT CACTTAACTCTGTGTAACTGTATTAATTCATAGATGAGTTTGTACAAGCA AAAATTAAGACTGTTCTCTTCTAGTGCCTAGCAAGCTTAGATACTAATGT TTTCTTGACAGGATTCAGGACACCGTTACATGCATAGCTTATCGTCACTA GACTGCTACACTAGTGTTGCTAACCACAGTAAATCATCTTCTAAAGAACT TGATGTAGAATATCCTGATCTGTCAACAAAGTTAATTTGGCCAAGCTACA AAAGAATCATTCCAAAATGTAGTGCCAAACCTAACAAAGTATGTTTTCGC AAAAAAAAAAAAAGGAAGTATGAGTGTGGCACCAAGACAAATAAAATGCC TAGTCAGAATTTAATTCCTTTTAGTCTAAGCATCGGGTATGTTTCATGCT AATATTTATTATGTTTTCATTGCAGGCATTTAGAAAACTGTACGAGGAAG TAGGACTTGGATGGGTTTATGCTGTTACTAAGTATGAGCCTGTAAGTCGC TACTTACAGAGAGCAAAACATAGGCTCAGCTTGGTCCATTCACTTCATAG GCTCACCATTCAGCCGCGTGCTTTTTATATAAGCAGAACATCTTACAGAT GAGATTAAACATAAGTTTTATCTTCTTAATGACACCTGTACCTCTTTATT CATCTTCTAATACTCTGCAGGTAGCTACCATGGCAAATGCAGTATATGGC GTGTGGGCGAAATACCGTATGCAAATTACAGGTATAG
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Coding sequence (CDS) from alignment at Sh_005M20:24408..31544+

>Sh_005M20_t000030 ID=Sh_005M20_t000030|Name=Sh_005M20_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=393bp|location=Sequence derived from alignment at Sh_005M20:24408..31544+ (R570 Sugarcane cultivar)
ATGGCGAGCTCGCTGGCCCGCCTAGGAGCGGCGCTGCCGCGCGCGCGCCC
ACGCCCACGCTTCGCGGCCCGAGCCCTGCCACCGGGGCGGTGGGACGCCG
CCGCGCTCGGCGCCTCCCGCCGCGCCGCGCTGAACGCTTACAGGTGCCAA
GTCCATTCCGACATTAAAGTAGCCCCTACATCGGACTTGAAGGACGGTGG
CAAATCTGAAGCTTGGAGGATCAAGATGCTCTATGACGGTGATTGCCCTC
TCTGTATGCGTGAGGCATTTAGAAAACTGTACGAGGAAGTAGGACTTGGA
TGGGTTTATGCTGTTACTAAGTATGAGCCTCTACCATGGCAAATGCAGTA
TATGGCGTGTGGGCGAAATACCGTATGCAAATTACAGGTATAG
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