Sh_005O03_contig-1_t000010

Overview
NameSh_005O03_contig-1_t000010
Unique NameSh_005O03_contig-1_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1965
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_005O03_contig-1contigSh_005O03_contig-1:26931..30879
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_005O03_contig-1_g000010Sh_005O03_contig-1_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_005O03_contig-1_p000010Sh_005O03_contig-1_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_005O03_contig-1_t000010 ID=Sh_005O03_contig-1_t000010|Name=Sh_005O03_contig-1_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1965bp
ATGGAGTCCCAGAAGAGTTGTCTTTTGATCACTTACTCCCAGGAGATTGT
AAATGGAGTTCCTTTGTATGTTTCATCAAACTGCCTGCCTGTAAAAGCTT
TGAAATATGAACCTGCTGGTCATTCGTTCCATGCTGCGGCAATGAAGCTT
CTTGGTCTTGGGCAGCATGAAGACATTGAAACTGATGATCATAGTGTCTC
ATCGGATGACAAAAGCCAAGATTTTAATACTGCTTCTGACACCTTTAGCA
GCAAAGGGAAGAAGAAGTCATCTGGCAGTCAACAGCAGGATCACTATGCA
TTGCTTGGGTTGGGACACTTGAGGTTCTTGGCCACTGAAGATCAGATTCG
GAAAAGTTACCGTGACATGGCTCTCAAACATCATCCAGATAAGCAGGCTT
CCTTGATTCTTGCAGAGACAACAGAGGAGGCAAAACAAGCAAAAAAGGAT
GAGATAGAGAGCCATTTCAAGGCCATCCAGGAGGCCTATGAAGTCCTCAT
TGACCCTACAAAGAGGAGGATTTATGACTCTACAGATGAGTTTGATGATG
ATGTCCCAACAGACTGTGCCCCACAAGACTTCTTCAAGGTTTTCGGCCCA
GCCTTCATGAGAAATGGACGCTGGTCTGTTACCCAGCCTATTCCTTCTCT
AGGAGATGATACTACTACTGTAGAGGAGGTTGATAAGTTCTACAATTTCT
GGTACAACTTCAAGAGTTGGAGGGAATTTCCAGATGATGATGAGTATGAC
TTGGAGCAAGCTGAATCTCGTGAACATAAGAGATGGATGGAGCGGCAGAA
CGCAAAGCTACAAGAGAAGGCCAAAAAGGCGGAATATGCGCGAGTACGCA
CTCTTGTGGACAATGCTTATAAGAAAGACCCAAGGATCCAGAGGAGGAAA
GAGGAGGAGAAAGCTGAGAAACAGAGAAGAAAGGAGGCGAAGTATTTGGC
AAAGAAATTGCAAGAAGAGGAAGCAGCAAGAGCTGCTGAAGAGGAAAGGA
TAATGAAAGAAGAAGAGTCTAAGAAAGCTGCAGAAGCTGCTCAGCATCAG
AAGAAGCTAAAGGAGAAAGAGAAGAAGCTGCTCCGCAAAGAGAAAACTCG
TCTGCGCACTCTTGCAGCACCTGTGGTTGCAGATAGCCACTTTGGTATGT
CAGAGGAAGATGTTGAATCAACATGTGCTAAACTTGATATGGAACAGCTG
AAGAAGCTCTGTGATGGAATGGATGGCAAGGATGCAGCTGAAAAGGCCAG
GTTGATGAGCAATGCACTTCGCAATGGAAGTTCCTCAAAGGAAGCGAAGA
AAATTGAAGCCAATGGTGTGGAGTGTTCTGCTCCAAAATCCAACTCTACA
GGAGGTAGAGCGACAGAAGGCAGTAGCAGCATATTGAAGAGCTATGAAAA
AAAAGAGAGACCATGGAGAAAGGAAGAGGTTGAGATGCTTAGGAAAGCAA
TGCAAAAGTATCCCAAGGGAACTTCGAGAAGATGGGAGGTTGTTTCAGAA
TTTATTGGGACTAACAGATCGGTTGAGGAAATTCTCAAGGCCACTAAGAG
TGTTCTTCTGCAGAAGCCAGACTCATCGAAAGCTTTCGACTCTTTCCTTG
AGAAGCGCAAACCGGCCCAATCTATTGCTTCACCTCTCTCGACCCGAGAT
GAAATTAGTTCCTCAACTGAGGGAGCTGGGACTGCATCGTCAAAGGCCGC
GTCACAACCTGCGAGTAGCCAGGCAGCCAATGGGAAAGCTGCTGCTGATC
CTTTCCCAGATGGAGCACCATCTGTGGCAGATCCAGATGCCTGGACAGAG
GCTCAGGTCCTGGCTCTAGTCCAAGCTTTGAAGGCTTTTCCCAAGGATGC
AATCCAAAGATGGGAGCGTGTAGCTGCTGCTGTCCCAGGTAAAACTTTTG
TCCAGTGCAAGAAAAAGGTTGCAGCAATGAGAGAGAATTTCCGGAGCAAG
AAAACTGGGGAGTAG
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protein sequence of Sh_005O03_contig-1_p000010

>Sh_005O03_contig-1_p000010 ID=Sh_005O03_contig-1_p000010|Name=Sh_005O03_contig-1_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=655bp
MESQKSCLLITYSQEIVNGVPLYVSSNCLPVKALKYEPAGHSFHAAAMKL
LGLGQHEDIETDDHSVSSDDKSQDFNTASDTFSSKGKKKSSGSQQQDHYA
LLGLGHLRFLATEDQIRKSYRDMALKHHPDKQASLILAETTEEAKQAKKD
EIESHFKAIQEAYEVLIDPTKRRIYDSTDEFDDDVPTDCAPQDFFKVFGP
AFMRNGRWSVTQPIPSLGDDTTTVEEVDKFYNFWYNFKSWREFPDDDEYD
LEQAESREHKRWMERQNAKLQEKAKKAEYARVRTLVDNAYKKDPRIQRRK
EEEKAEKQRRKEAKYLAKKLQEEEAARAAEEERIMKEEESKKAAEAAQHQ
KKLKEKEKKLLRKEKTRLRTLAAPVVADSHFGMSEEDVESTCAKLDMEQL
KKLCDGMDGKDAAEKARLMSNALRNGSSSKEAKKIEANGVECSAPKSNST
GGRATEGSSSILKSYEKKERPWRKEEVEMLRKAMQKYPKGTSRRWEVVSE
FIGTNRSVEEILKATKSVLLQKPDSSKAFDSFLEKRKPAQSIASPLSTRD
EISSSTEGAGTASSKAASQPASSQAANGKAAADPFPDGAPSVADPDAWTE
AQVLALVQALKAFPKDAIQRWERVAAAVPGKTFVQCKKKVAAMRENFRSK
KTGE*
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mRNA from alignment at Sh_005O03_contig-1:26931..30879+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_005O03_contig-1_t000010 ID=Sh_005O03_contig-1_t000010|Name=Sh_005O03_contig-1_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=3949bp|location=Sequence derived from alignment at Sh_005O03_contig-1:26931..30879+ (R570 Sugarcane cultivar)
TTTATCGCCGGCTGCTAGGGTTTTATAGTTGGCGCCGCGACCTGAGCAGA ACCGCCTCCATCCCCGACGCCCCCTCATCGCGTGGCCGATCCTTAGCATC GCCGCCCTCCCCGTCCTCTCCTCCCGTTCCCTGCGGTATCCCTGACTCTC ACGCCGCCGCCTTCCAACGAGCCGACGTGCCGAACGGAGGGAGATCCGTC GTCCCCTGTCCTTCTCTCGGTAAGGAAGCCCCGATCAGACCTTCGTTTGT TCCAATCCATGTTCGAGGCGAGGCTTCGATTTTTTATTGCGGGGAAGGGG CTTAACTAGCCGTCCTATTAGTGATGATGCGTAATTTATGACACGCGCTC CACCACGGGGATTTGTGATACCTGATGAATTTGAATTGATTGAGGGAGCA TATGCAGCGGGTGGTTACCCATCCCACATGTGCCTTGTTGAGCTTGTTTC GTGGTTAATAGGATTATTAGGATGCCATGCGCTCCTAATTCGTTATAGAT TGTGTGCAGAGTACTATCTCCATGCCATGCTGCATTTGTTTACCTGCTTG TAAGTTAAAATCATTAGCACTGGTTTGACTGCACTTTGTTGAAGAATTAT GAGTTACATGACCTTGCAAATTGAACAAAGGGACTGTGTTGGTTCAAATC TCCTTTTTTGGTTACATATTCCCAGGGCTTAAGCTGGTCTGTCCACAGAT TTTTAAACAATTAAGAGTCCGGTAGCCTTATAAGAATTGAAAGCAAGACA AGGTACTGCATTTGTTCACATGTCCTATGTTACACATTCCAAATTGAAGA AAGTGACTGTTTGTTCAAATCCCCTTCCTTTGTTACATATTCTCAGTGTT TCTGTTGTTCTATCTGCTCATTGTTGAACAATTAAGGGTTCTGTAGCCTT AAGTTTTGAAAGAAAGGTGCTGCATTCGTTCATGTTCTATGTTATGTATG TATTACAATGAGGCACAACAGGGTTTGTGCACTCATTGTTGAACATTTAC AAGTTCTGTAGCCTTGCAAACTAGAAAGGGGGCTGCATTTGATAAAGTGT CCTAGGTTTCATATTCTGATGGCAGCAAGTGGGCTTAATGGCCATGATGG TGTACCTTAATTATTAATTCTTAATATACAGAATACTAGTAGCATTTATG CTGCTTTAGCTACCAAGTTTGCCTTTGCATGTATTTGGTCCTCGCATGCA ACTTGTATTACCACTTTATGAACTTAGATAGCAGATGGCATGCTAGAGAC TAAACTTCACATATTTTCAACTGGGTGATGGAACTTAGCTTCTTATTGTA TGTTTGTTCATTGTTTGGTCGCACTGATTACTATGTATAATTGTTGTATA TATTGTACTTCGAAAGATGCTGTTTATCAATTTGGAACTAATTTGCTAAG TATCTGGCTAATCGACTTGTTAATTTCTGCAGGCCGTATCATTTTATCTT GACTCAGGAACTTTGTTAACAATTTGAAATCATTGACATATGGAGTCCCA GAAGAGTTGTCTTTTGATCACTTACTCCCAGGAGATTGTAAATGGAGTTC CTTTGTATGTTTCATCAAACTGCCTGCCTGTAAAAGCTTTGAAATATGAA CCTGCTGGTCATTCGTTCCATGCTGCGGCAATGAAGCTTCTTGGTCTTGG GCAGCATGAAGACATTGAAACTGATGATCATAGTGTCTCATCGGATGACA AAAGCCAAGATTTTAATACTGCTTCTGACACCTTTAGCAGCAAAGGGAAG AAGAAGTCATCTGGCAGTCAACAGCAGGATCACTATGCATTGCTTGGGTT GGGACACTTGAGGTTCTTGGCCACTGAAGATCAGATTCGGAAAAGTTACC GTGACATGGCTCTCAAACATCATCCAGATAAGCAGGCTTCCTTGATTCTT GCAGAGACAACAGAGGAGGCAAAACAAGCAAAAAAGGATGAGATAGAGAG CCATTTCAAGGCCATCCAGGAGGCCTATGAAGTCCTCATTGACCCTACAA AGAGGAGGATTTATGACTCTACAGATGAGTTTGATGATGATGTCCCAACA GACTGTGCCCCACAAGACTTCTTCAAGGTTTTCGGCCCAGCCTTCATGAG AAATGGACGCTGGTCTGTTACCCAGCCTATTCCTTCTCTAGGAGATGATA CTACTACTGTAGAGGAGGTTGATAAGTTCTACAATTTCTGGTACAACTTC AAGAGTTGGAGGGAATTTCCAGATGATGATGAGTATGACTTGGAGCAAGC TGAATCTCGTGAACATAAGAGATGGATGGAGCGGCAGAACGCAAAGCTAC AAGAGAAGGCCAAAAAGGCGGAATATGCGCGAGTACGCACTCTTGTGGAC AATGCTTATAAGAAAGACCCAAGGATCCAGAGGAGGAAAGAGGAGGAGAA AGCTGAGAAACAGAGAAGAAAGGAGGCGAAGTATTTGGCAAAGAAATTGC AAGAAGAGGAAGCAGCAAGAGCTGCTGAAGAGGAAAGGATAATGAAAGAA GAAGAGTCTAAGAAAGCTGCAGAAGCTGCTCAGCATCAGAAGAAGCTAAA GGAGAAAGAGAAGAAGCTGCTCCGCAAAGAGAAAACTCGTCTGCGCACTC TTGCAGCACCTGTGGTTGCAGATAGCCACTTTGGTATGTCAGAGGAAGAT GTTGAATCAACATGTGCTAAACTTGATATGGAACAGCTGAAGAAGCTCTG TGATGGAATGGATGGCAAGGATGCAGCTGAAAAGGCCAGGTTGATGAGCA ATGCACTTCGCAATGGAAGTTCCTCAAAGGAAGCGAAGAAAATTGAAGCC AATGGTGTGGAGTGTTCTGCTCCAAAATCCAACTCTACAGGAGGTAGAGC GACAGAAGGCAGTAGCAGCATATTGAAGAGCTATGAAAAAAAAGAGAGAC CATGGAGAAAGGAAGAGGTTGAGATGCTTAGGAAAGCAATGCAAAAGTAT CCCAAGGGAACTTCGAGAAGATGGGAGGTTGTTTCAGAATTTATTGGGAC TAACAGATCGGTTGAGGAAATTCTCAAGGCCACTAAGAGTGTTCTTCTGC AGAAGCCAGACTCATCGAAAGCTTTCGACTCTTTCCTTGAGAAGCGCAAA CCGGCCCAATCTATTGCTTCACCTCTCTCGACCCGAGATGAAATTAGTTC CTCAACTGAGGGAGCTGGGACTGCATCGTCAAAGGCCGCGTCACAACCTG CGAGTAGCCAGGCAGCCAATGGGAAAGCTGCTGCTGATCCTTTCCCAGAT GGAGCACCATCTGTGGCAGATCCAGATGCCTGGACAGAGGCTCAGGTCCT GGCTCTAGTCCAAGCTTTGAAGGCTTTTCCCAAGGATGCAATCCAAAGAT GGGAGCGTGTAGCTGCTGCTGTCCCAGGTAAAACTTTTGTCCAGTGCAAG AAAAAGGTTGCAGCAATGAGAGAGAATTTCCGGAGCAAGAAAACTGGGGA GTAGACTGAGGCATTGCCTCACTAGAAGTACATTTTGCAGGGAAGAGAAA TCTCTGATGGCAATATTTTTATCCCTCAAAAAAAAAAGGATGGCAATATC TATAGATTGGATCTTGGCTGGTGAGGTATTACTTGGCGAATCTCTCATGC CTCCAGTGGTGAGGATAATTTTTGTTACGGAGCTATGATAACTCATTTAT TGTGCCAGGCCACCAGGGTGGTTTTACTTTGGTCAGCTGTAGGAGGATGC CATTGAAGCTCATCTACTGTTGATGGACTGATGATTGGCATTTTGTAGCA GTGGTTTGTGTTGACTTTGTTTCGTCTGGCTCCTGGGGTTGTCTATGCGT TGCTGGAATTGGTGCCCTGGTTCGGTAAAATGTAGAGAACCATATATGTT TTTATTCATTATTAATAACTATAAGATAGGAATATATGTTACATCGTGAG ACCTGTTATTGAAGTAAGCATTATTTTTCCTGGCCACGCACTTTGTAGT
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Coding sequence (CDS) from alignment at Sh_005O03_contig-1:26931..30879+

>Sh_005O03_contig-1_t000010 ID=Sh_005O03_contig-1_t000010|Name=Sh_005O03_contig-1_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=1965bp|location=Sequence derived from alignment at Sh_005O03_contig-1:26931..30879+ (R570 Sugarcane cultivar)
ATGGAGTCCCAGAAGAGTTGTCTTTTGATCACTTACTCCCAGGAGATTGT
AAATGGAGTTCCTTTGTATGTTTCATCAAACTGCCTGCCTGTAAAAGCTT
TGAAATATGAACCTGCTGGTCATTCGTTCCATGCTGCGGCAATGAAGCTT
CTTGGTCTTGGGCAGCATGAAGACATTGAAACTGATGATCATAGTGTCTC
ATCGGATGACAAAAGCCAAGATTTTAATACTGCTTCTGACACCTTTAGCA
GCAAAGGGAAGAAGAAGTCATCTGGCAGTCAACAGCAGGATCACTATGCA
TTGCTTGGGTTGGGACACTTGAGGTTCTTGGCCACTGAAGATCAGATTCG
GAAAAGTTACCGTGACATGGCTCTCAAACATCATCCAGATAAGCAGGCTT
CCTTGATTCTTGCAGAGACAACAGAGGAGGCAAAACAAGCAAAAAAGGAT
GAGATAGAGAGCCATTTCAAGGCCATCCAGGAGGCCTATGAAGTCCTCAT
TGACCCTACAAAGAGGAGGATTTATGACTCTACAGATGAGTTTGATGATG
ATGTCCCAACAGACTGTGCCCCACAAGACTTCTTCAAGGTTTTCGGCCCA
GCCTTCATGAGAAATGGACGCTGGTCTGTTACCCAGCCTATTCCTTCTCT
AGGAGATGATACTACTACTGTAGAGGAGGTTGATAAGTTCTACAATTTCT
GGTACAACTTCAAGAGTTGGAGGGAATTTCCAGATGATGATGAGTATGAC
TTGGAGCAAGCTGAATCTCGTGAACATAAGAGATGGATGGAGCGGCAGAA
CGCAAAGCTACAAGAGAAGGCCAAAAAGGCGGAATATGCGCGAGTACGCA
CTCTTGTGGACAATGCTTATAAGAAAGACCCAAGGATCCAGAGGAGGAAA
GAGGAGGAGAAAGCTGAGAAACAGAGAAGAAAGGAGGCGAAGTATTTGGC
AAAGAAATTGCAAGAAGAGGAAGCAGCAAGAGCTGCTGAAGAGGAAAGGA
TAATGAAAGAAGAAGAGTCTAAGAAAGCTGCAGAAGCTGCTCAGCATCAG
AAGAAGCTAAAGGAGAAAGAGAAGAAGCTGCTCCGCAAAGAGAAAACTCG
TCTGCGCACTCTTGCAGCACCTGTGGTTGCAGATAGCCACTTTGGTATGT
CAGAGGAAGATGTTGAATCAACATGTGCTAAACTTGATATGGAACAGCTG
AAGAAGCTCTGTGATGGAATGGATGGCAAGGATGCAGCTGAAAAGGCCAG
GTTGATGAGCAATGCACTTCGCAATGGAAGTTCCTCAAAGGAAGCGAAGA
AAATTGAAGCCAATGGTGTGGAGTGTTCTGCTCCAAAATCCAACTCTACA
GGAGGTAGAGCGACAGAAGGCAGTAGCAGCATATTGAAGAGCTATGAAAA
AAAAGAGAGACCATGGAGAAAGGAAGAGGTTGAGATGCTTAGGAAAGCAA
TGCAAAAGTATCCCAAGGGAACTTCGAGAAGATGGGAGGTTGTTTCAGAA
TTTATTGGGACTAACAGATCGGTTGAGGAAATTCTCAAGGCCACTAAGAG
TGTTCTTCTGCAGAAGCCAGACTCATCGAAAGCTTTCGACTCTTTCCTTG
AGAAGCGCAAACCGGCCCAATCTATTGCTTCACCTCTCTCGACCCGAGAT
GAAATTAGTTCCTCAACTGAGGGAGCTGGGACTGCATCGTCAAAGGCCGC
GTCACAACCTGCGAGTAGCCAGGCAGCCAATGGGAAAGCTGCTGCTGATC
CTTTCCCAGATGGAGCACCATCTGTGGCAGATCCAGATGCCTGGACAGAG
GCTCAGGTCCTGGCTCTAGTCCAAGCTTTGAAGGCTTTTCCCAAGGATGC
AATCCAAAGATGGGAGCGTGTAGCTGCTGCTGTCCCAGGTAAAACTTTTG
TCCAGTGCAAGAAAAAGGTTGCAGCAATGAGAGAGAATTTCCGGAGCAAG
AAAACTGGGGAGTAG
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