Sh_006L22_contig-1_t000020

Overview
NameSh_006L22_contig-1_t000020
Unique NameSh_006L22_contig-1_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_006L22_contig-1contigSh_006L22_contig-1:8318..8889
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_006L22_contig-1_g000020Sh_006L22_contig-1_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_006L22_contig-1_p000020Sh_006L22_contig-1_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_006L22_contig-1_t000020 ID=Sh_006L22_contig-1_t000020|Name=Sh_006L22_contig-1_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=300bp
ATGAGGAACACTAATTGCTCGAGTGATTCACATCAATTGTTTGGCGATGG
AAGTTGCAATAGCAATGCAGTTCTGTCACATTTTAATGAGTATTCCGAAC
AATGCTTTTCAGAAGTGTCTAGTGATTTTGCTAGTAAAACTCGCCTTCTC
AAGTCCATGAAAGCTGATCTTGACCATGTTTTCGCAAAGCTAAGAGGGAT
GAAAGCTAGGCTAGCAGCCACTTATCCGGACGCTTTCCCTGATGGTGCGA
TGTCAAAGACGATGGACCAGAGACCAGACCTTGAAAGCCCTCTGGATTAG
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protein sequence of Sh_006L22_contig-1_p000020

>Sh_006L22_contig-1_p000020 ID=Sh_006L22_contig-1_p000020|Name=Sh_006L22_contig-1_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=100bp
MRNTNCSSDSHQLFGDGSCNSNAVLSHFNEYSEQCFSEVSSDFASKTRLL
KSMKADLDHVFAKLRGMKARLAATYPDAFPDGAMSKTMDQRPDLESPLD*
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mRNA from alignment at Sh_006L22_contig-1:8318..8889-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_006L22_contig-1_t000020 ID=Sh_006L22_contig-1_t000020|Name=Sh_006L22_contig-1_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=572bp|location=Sequence derived from alignment at Sh_006L22_contig-1:8318..8889- (R570 Sugarcane cultivar)
ATGAGGAACACTAATTGCTCGAGTGATTCACATCAATTGTTTGGCGATGG AAGTTGCAGTGATTGCCGTCTTCCTTTCCATTTCTAGTTATGAACTTATG ATCATTTGGATTTTGAATGTGATTTTCCTTTATTATGCAGACTGGGGTGA TTGCAAGATAGCAATGCAGTTCTGTCACATTTTAATGAGTATTCCGAACA ATGCTTTTCAGAAGTGTCTAGTGATTTTGCTAGTAAAACTCGCCTTCTCA AGTCCATGAAAGCTGATCTTGACCATGTTTTCGCAAAGCTAAGGTACCAT CCCGTTTCTAAATTTTAATTGATGTCCGCGTCTCTATTAATTTTCCAGTC GTAACATGTCGTTGTGCTCAGTTTTTTCTTACCCCTGAATTTGGATTTGG TATCTACTCCTAAGTTTAAGATAGTTTTCCAGCTAATTAGGCTTTGTCTC TCCTTTTTTTCTGTAGAGGGATGAAAGCTAGGCTAGCAGCCACTTATCCG GACGCTTTCCCTGATGGTGCGATGTCAAAGACGATGGACCAGAGACCAGA CCTTGAAAGCCCTCTGGATTAG
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Coding sequence (CDS) from alignment at Sh_006L22_contig-1:8318..8889-

>Sh_006L22_contig-1_t000020 ID=Sh_006L22_contig-1_t000020|Name=Sh_006L22_contig-1_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=300bp|location=Sequence derived from alignment at Sh_006L22_contig-1:8318..8889- (R570 Sugarcane cultivar)
ATGAGGAACACTAATTGCTCGAGTGATTCACATCAATTGTTTGGCGATGG
AAGTTGCAATAGCAATGCAGTTCTGTCACATTTTAATGAGTATTCCGAAC
AATGCTTTTCAGAAGTGTCTAGTGATTTTGCTAGTAAAACTCGCCTTCTC
AAGTCCATGAAAGCTGATCTTGACCATGTTTTCGCAAAGCTAAGAGGGAT
GAAAGCTAGGCTAGCAGCCACTTATCCGGACGCTTTCCCTGATGGTGCGA
TGTCAAAGACGATGGACCAGAGACCAGACCTTGAAAGCCCTCTGGATTAG
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