Sh_006L22_contig-1_t000060

Overview
NameSh_006L22_contig-1_t000060
Unique NameSh_006L22_contig-1_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_006L22_contig-1contigSh_006L22_contig-1:24713..27889
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_006L22_contig-1_g000060Sh_006L22_contig-1_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_006L22_contig-1_p000060Sh_006L22_contig-1_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_006L22_contig-1_t000060 ID=Sh_006L22_contig-1_t000060|Name=Sh_006L22_contig-1_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=198bp
ATGTGTAAGGGTCATCAAGGAGGGCTTGGAGAAACTACAACCATTGCACA
CCAGGAGGTGGCTCATGACAAGGATACATGTCACAAGTGTCAAACGCATA
AAAAACTTCCTCTAATGAAGGTTGGGTCCATAGTGCTACTAATGACATCA
AAATATCCTAATAAGGCTAATGTGGCCTACAAATCTCTTGAGCACTGA
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protein sequence of Sh_006L22_contig-1_p000060

>Sh_006L22_contig-1_p000060 ID=Sh_006L22_contig-1_p000060|Name=Sh_006L22_contig-1_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=66bp
MCKGHQGGLGETTTIAHQEVAHDKDTCHKCQTHKKLPLMKVGSIVLLMTS
KYPNKANVAYKSLEH*
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mRNA from alignment at Sh_006L22_contig-1:24713..27889-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_006L22_contig-1_t000060 ID=Sh_006L22_contig-1_t000060|Name=Sh_006L22_contig-1_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=3177bp|location=Sequence derived from alignment at Sh_006L22_contig-1:24713..27889- (R570 Sugarcane cultivar)
GTTCAGCCGCCCATCACCGTTCGTCCGTTCCTGCGTTTGGCGAGGTGAGC AGTAAGAATCCTTAGCACCCCAATTCCGATCTATTGAGTACCTCAACTCC TGATCTGACTCGCCGGTCACCACCTCTCTGATCCGCGTATTGTTGAAATC TAGGTCGTCTTTCAGCAGCGTTCGGCGCCGTCATTCCCCTCTGTTGCCGC TGGATTCTAGGGCAGGTGAACGTGCGTACAGTGCCTACCCCCTCACAGCG TCTCAGGTGATTTCCTCACTTCTTTTGCGCTTCTCTTCCGATCTGCGTGG AATCGAAGTGCTTTGTATGCTTAGGTCTGATTTGGCCATCTCTTCCGATC TTGTAAATCTCTGCCTGTGATGTTTTGAAGTGTGAACGTAATGCTATTGA CATACTGAAATTGCAATGCTCTATTGACTGATTGTGTAATACGAAGAACC TGGCAAATGTACATATGAACCCGTGAATGCATACATGATGATTGTATATC TTACAGAAAAAGAACTAACACGATCACCTGTTGGCCTGGCCTCCGACGCA AAGCCCAAAAGTCCTAACATCGGATTGGCCGATCAGGATCACCAATCGAT GTTCCCTGAATGGGGATTCCCTTTTTTTTACAACTTTGCCTTGATGCCTT GTTCTGATTTGGTAATCTCAGCCTTGATATTTTGTTGATTTTTTCAGCCT TGATGTGTTGTGGATTTGTCAAATTTTTTTCTGAATTTGTTCGTGTGATA TTTTGGAATGGACCTGCTGAATTTGCAATGCTCTGACTGCCTAGTTCTAA GAACCTGACAAATGTACAGATGAACCTCTGAATGTGTACATTATAATTGT GTATCTTAGATGAAAAAAATCTAACACGGTCTACCATTCGTCAGGATCGC CAATCGTTGTTCCCTGAATTGGGATCGCCACCATCTAAACCTATCTCCAG TCAGATTTGATACATTGATCTAATGCACATTTCTGAAAATGCCTTGGTCA GTGTTCGCAACCATGCATTGCAAACATTAATTCTCTATCACACATGCAAA CTATGTCAGATTTACCCCCATGCATTTGTCTCGGTTTCCTACAAATAAAG TTCAAGTTCATGCAAAGGTTTGTTGCTCTTTATAGGCCTGTGTGCGCTCG TGTGCTCAAACTGCATCTTTTTAACCGAATTAAATCAATGAAACTGTTAT GTTTCTCATTCAGAGCAATGCCATTGCTCTCATTTTCCCCTTTTGTTCTT GGTTGCAATAGTATAGCATTTCCCTTTGGTTGCAGACTTGCAGTATAGCT GTAGGGGCCATCAGCTCTCATCTTCGCTGTTGTTTTCAGGTAGCAGGAGG AGTTTAGCTGCTGGACAGCGACAATTAGGTGAGCAGGTAGCAGTGCATCA GTAGCTTATCTGCTTATGCAGTTGTAGCTTTAATTCCTTCGCATAGGCAA AGGCATGGTCATTCAGGTTACAGAATACTTCCAGCAACAGTTCAGTATGT TTTTGTGAAATGTCTAATCATGATACAGTGATCCATCTTTTAATAATATC TGGTTTCATGATTTTAGTCATTATTTATTCAATATCTGCTAACTTCTAAA GTTCGCTTCTTAGTGCATGGTTGAAATGGGAGTAAATAAAGGGCAGACTT TTCACATTTTTCTTCCTGAATGTTAGACGAAAATTTGTAACTTTGAAATG TGTTACTCAAACTTTATATCTTTTCTAGGGAAATTATGCTAGGAGTGATC ATAACAATTCTCAGAATTAAAAGGTGCATTCTAAAAGAAAGGCATTGATC TATTTTTCATGTTTTCACCTAATCTAATCTTTTGGCTTTAATATTGTTTC AAATTTTCTAGAGAGTTCAATGTGTTGCACCGAACCAGAATGATGGATTC CTTAAATACAGGGATGAATTGGTAAAGTCACTTGCTTGTGAATTTAATAC TTATTTTATCCACAAATGATCTTTTTATAATAACTCATGCTACTATCTTT TTTCTCTTTACTAGAATAAAGAGACATGTGAGTCTGAATTTAGAGATGAT GACAATCTACTTTTATCCAGCGAAAAGGTTATCAACTGGTTTCTTATATT TAACAATAATAATATACTCCTAGTTTATTATATGTTAATATTTTTAACTT GTAATTATCATTTGAATGAATTTGAATTGGAATCGGAATCAGTGCCAAAG TGGCAATAATGACAAGGAAATAGGTGAAGTGGAAGCACATGCAATATTTC AACGATGCCTCAATAATGATTCTAGACGAATAGAGGTATACTTTTTCAAT GTACAATTAAATAAAATATATTAGACTTGTAATGCCAGTTACTCAAGATG TGTAATAGTGTAACAATGTATAAATACAATTATCTTTCTATTCCTTTCAG TTTGATTCCAGTTAAAGGAATTCCACCACAAATAGAATAACAAAGAAACA TAAGGTATCTATGAACCACACTTTGCTATAATTATAGTAGATTTTTTTTC TTAATATTTCATAGTTCATTTTATATGTGTAAGGGTCATCAAGGAGGGCT TGGAGAAACTACAACCATTGCACACCAGGAGGTGGCTCATGACAAGGATA CATGTCACAAGTGTCAAACGCATAAAAAACTTCCTCTAATGAAGGTAGAC AAACATAATATTACTTGTTCTAATTGCATGATCTTGATGTACAACTAAGG GTGGTTGGTCACTAAGAGATTATGTTAAATTAATATAGGTTGGGTCCATA GTGCTACTAATGACATCAAAATATCCTAATAAGGCTAATGTGGCCTACAA ATCTCTTGAGCACTGATCCAGAAGCCATTGTTGGTGGAGTTAAGACTGGA AGTCAATTTTGCAAAGTGCGTATCAATCATCCTATTGCAAAATATGAGCC ATTAATGAGGCCCATGCCTTGGTGCAACAATATTGGTGATGCCCATACCA AAGGAGTCCCAATTACTTGGCCTTTGATGTTGGTATGTTCAAACTAACTT TCTTAACTTCACATCAATGTACATTTGTGGCCTAATTTGTAATGTTACAA CTTACATTTTCTTTGTAGGTTAAAATAATTAATAATTGAATTCCTACATC GATGCGTACAAAGAATGAAAGAAGAAGCAATAGAATTTATTAATCCTAAC TAGTTCTTGAATTTTTCTTTCTAGTAT
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Coding sequence (CDS) from alignment at Sh_006L22_contig-1:24713..27889-

>Sh_006L22_contig-1_t000060 ID=Sh_006L22_contig-1_t000060|Name=Sh_006L22_contig-1_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=198bp|location=Sequence derived from alignment at Sh_006L22_contig-1:24713..27889- (R570 Sugarcane cultivar)
ATGTGTAAGGGTCATCAAGGAGGGCTTGGAGAAACTACAACCATTGCACA
CCAGGAGGTGGCTCATGACAAGGATACATGTCACAAGTGTCAAACGCATA
AAAAACTTCCTCTAATGAAGGTTGGGTCCATAGTGCTACTAATGACATCA
AAATATCCTAATAAGGCTAATGTGGCCTACAAATCTCTTGAGCACTGA
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