Sh_006L22_contig-1_t000080

Overview
NameSh_006L22_contig-1_t000080
Unique NameSh_006L22_contig-1_t000080
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length951
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_006L22_contig-1contigSh_006L22_contig-1:34474..37870
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteHomeobox-leucine zipper protein HOX32
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_006L22_contig-1_g000080Sh_006L22_contig-1_g000080R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_006L22_contig-1_p000080Sh_006L22_contig-1_p000080R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_006L22_contig-1_t000080 ID=Sh_006L22_contig-1_t000080|Name=Sh_006L22_contig-1_t000080|organism=R570 Sugarcane cultivar|type=mRNA|length=951bp
ATGGCGATGGTGGTGGTCGGGGGCGGCAAGGACCGGTCCTCGCCTGGCGG
CGGTGGGGCGCCGCAGGTGGACACAGGCAAGTACGTGCGCTACACCCCCG
AGCAGGTGGAGGCGCTCGAGCGGGTCTACAGCGAGTGCCCCAAGCCCAGC
TCGCTGCGCAGGCAGCAGCTCATCAGGGAGTGCCCCATACTCAGCAACAT
CGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACCGCAGGTGCCGCGAGA
AGCAGCGGAAGGAGGCCTCGCGCCTGCAGACTGTGAACCGGAAGCTGACT
GCGATGAACAAGCTGTTGATGGAGGAGAATGACAGGCTGCAGAAGCAGGT
CTCCCGACTCGTCTACGAGAATGGGTACATGCGACAGCAGCTCCATAATC
CTTCTGCTGCGACCACAGACACGAGCTGTGAGTCTGTGGTCACAAGTGGT
CAGCACCACCAACAGCAAAACCCAGCAGCTCCGCGTCCTCAACGGGACGC
GAATAACCCAGCTGGTCTACTAGCTATTGCTGAGGAGACCTTGGCAGAGT
TCCTGTCGAAAGCGACAGGAACTGCTGTCGATTGGGTGCAAATGGTTGGG
ATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTG
TAGTGGCGTAGCAGCCCGAGCTTGCGGCCTAGTGAGCCTTGAGCCCACAA
AGGTCGCGGAGATCCTCAAGGATCGCCCTTCTTGGTACCGCGACTGCCGG
TGCGTGGATATCCTCCATGTTATCCCTACGGGTAACGGTGGAACTATCGA
GCTTATCTACATGCAGACTTACGCACCGACAACTCTGGCGGCACCACGCG
ACTTTTGGACTCTCCGATACACTAGTGGTCTTGAGGATGGCAGTCTTGTG
ATCTGTGAGAGATCATTGACACAATCGACTGGACACTACTACAAAACATA
G
back to top

protein sequence of Sh_006L22_contig-1_p000080

>Sh_006L22_contig-1_p000080 ID=Sh_006L22_contig-1_p000080|Name=Sh_006L22_contig-1_p000080|organism=R570 Sugarcane cultivar|type=polypeptide|length=317bp
MAMVVVGGGKDRSSPGGGGAPQVDTGKYVRYTPEQVEALERVYSECPKPS
SLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLT
AMNKLLMEENDRLQKQVSRLVYENGYMRQQLHNPSAATTDTSCESVVTSG
QHHQQQNPAAPRPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMVG
MKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCR
CVDILHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWTLRYTSGLEDGSLV
ICERSLTQSTGHYYKT*
back to top

mRNA from alignment at Sh_006L22_contig-1:34474..37870-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_006L22_contig-1_t000080 ID=Sh_006L22_contig-1_t000080|Name=Sh_006L22_contig-1_t000080|organism=R570 Sugarcane cultivar|type=mRNA|length=3397bp|location=Sequence derived from alignment at Sh_006L22_contig-1:34474..37870- (R570 Sugarcane cultivar)
CCTCTCTCCCCCATCCCCGTCTCGCCGCTAGCTTTCCCTTTCCCTTGCGC TCCTCCCCTCCTCACCCTCCCGGTCGGCTCGCCAAGCAAGCAACAACCAC CCCCCACCACCACCGCCACTCCTCTCAGTCTCTCACCACCATGGCGTCGG GCGGCTGCGCTCTCGCCCCGAGGCTATGACTTGGCGCCGCCCGTGGCCGT GGCTCTCCGTCTTCTTCCGACAATCCCTCCTCCTCCTCCTCCTCCTCCTC CTGCTCCTCCTCCTTGGGCGGCGGTGCTAGCTACCTAGATGGCGATGGTG GTGGTCGGGGGCGGCAAGGACCGGTCCTCGCCTGGCGGCGGTGGGGCGCC GCAGGTGGACACAGGCAAGTACGTGCGCTACACCCCCGAGCAGGTGGAGG CGCTCGAGCGGGTCTACAGCGAGTGCCCCAAGCCCAGCTCGCTGCGCAGG CAGCAGCTCATCAGGGAGTGCCCCATACTCAGCAACATCGAGCCCAAGCA GATCAAGGTCTGGTTCCAGAACCGCAGGTGCGTGCGTCGCCGGAACCACC AGCCCTTCTCTCCATCCATCGTCTCATCTCTGTTCGTGCCTCCTGCTACT GAAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGTTGTTGTC GTCTTGGGTTAAATTATTATTAATGGAACGAGCTTCCTTGTTAGCCGCAT ATTCTTAGGATGTTTGCCTTCATGTAAGTAAGCCATCGAAATCGTCTTGA GTACAAAGAGAAGAGGCGCGAAATGGTTTTGGTAATAAGTTCTGGTTAGT TTTCAAGGATGTTACGTTCTGCCTCTTGCATTGGACTGGCTGCCAGCACA CAACACAAGGCCCTCCCTTGGTCTGCTTTTGTTTGGAGTCATCAGTTCCT ATGATATGATTTTTGAGTTCTGAGGTCGGTCCATATTTTCTCAGTTTTCA GCTGGAACTTGAACATCGAGTACTGCGCTGTAGGACTGCAAATTCTCTTT GCTGACCCCCCCCCCCCCGTTTGTCTCGCGGTTAGGCGTAATGGATGCGT CTTCTGCTGCTCGCATGTGCTGCTATTGTTTTCTCCGCACGTAGCAACAA ACTTTGCTTAGGGTGTGATTACTGCGCGAAAAGTAGCTGAAAAGTTACTG TAGCATCTTTCGTGGTTATTTGGTAAAATTTGTCTAATTATGGACTAGCT AGGCTCAAAAGATTCATCCCGACATTTACAGACAAACTATACAATTAGTT ATCTTTTTTACCTACATTTAATGCTCCATGCATGCGTCGAAAGATTTGAT GTGATGGATGAAAGAGGAAATATTTTTGGATTGGGATGGGGAAGTAAACA AGGCCTTAGCATTTGTAAGAAGAAGCTGCTGTCCCTGTATTTGGATAAAT AAATGGATCTAATTAGATACCCCGTGCCTATCACAACGTTCACGTTAAGA GCAGATTTGAAGGGTAGTGGGGAAACAAAACGTCATTTTCAGTTGGGCAA CCAATTAACTCGCCTGAGTTTGTGTGAGCCATTGCTTGCTTTACTGCCAC ACGGTCTTGTAGCTGGAATACGATGTTTAGAATGAGCAATTACATTTGAA TACTGCGAGCCAGGAATCGCTGTCTTGGTTTCTTAAGCTGTGCGCGTGAG ATTATCAGCCAAATTAGCCAGCCAACAGTTTTTTTCTCTTAAAAAAACCA GTCAGCACACTTTCAGCCAGCCAGATCAACCCAAACGAACTCCTGTGCGA TGTGACTACGATTCTGATGATTCTTGCGGTTGATTGGTAGGTGCCGCGAG AAGCAGCGGAAGGAGGCCTCGCGCCTGCAGACTGTGAACCGGAAGCTGAC TGCGATGAACAAGCTGTTGATGGAGGAGAATGACAGGCTGCAGAAGCAGG TCTCCCGACTCGTCTACGAGAATGGGTACATGCGACAGCAGCTCCATAAT GTGAGATCCGTCTCCTTTGCCCATTCCCCAGAACATCTTGCTCGTGTTTT TCTAGATAAATCAGCTGAATGCTACTAAGTATCATGTAAAAGTGAATGTG CTGTTTTATGTAACTTTTGATGTGCACCTTGTTGCATGCTTCCACGTCTA ATACTGTGTGTTATGATGTTTGCAGCCTTCTGCTGCGACCACAGACACGA GCTGTGAGTCTGTGGTCACAAGTGGTCAGCACCACCAACAGCAAAACCCA GCAGCTCCGCGTCCTCAACGGGACGCGAATAACCCAGCTGGGTAATTTCA GTCCCCAACATTTCTTAGACCGCTTTTGTGCTTGCATGCTTGTAAATCTG ATGGCGTTCTTTTTCGTTATGGCAGTCTACTAGCTATTGCTGAGGAGACC TTGGCAGAGTTCCTGTCGAAAGCGACAGGAACTGCTGTCGATTGGGTGCA AATGGTTGGGATGAAGGTAATATAATTGTTGCGACAAAAAGAAAGAATTG TGCCATGTGTTGCCTACTTCAATTCTGTTTTGGCTAATTACTTAAATCAT GAATTCCTTTACAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCG CACAATTGTAGTGGCGTAGCAGCCCGAGCTTGCGGCCTAGTGAGCCTTGA GCCCACAAAGGTGTGTTTTTTTTTGTTCATTCTTCATCATCACATAGCTT TATGTTTCTGTTCAGCAGACATGCCCTAACTGACTAGTCCATAGGTCGCG GAGATCCTCAAGGATCGCCCTTCTTGGTACCGCGACTGCCGGTGCGTGGA TATCCTCCATGTTATCCCTACGGGTAACGGTGGAACTATCGAGCTTATCT ACATGCAGGTAAGCATCGTCATACAAGTTATAGTGCTTTCTGCATTCTTG AATCATTGTCCTCCATGTTGCCTGTTAACATGACTGTTACTTTCATCACA TTCTTTAGACTTACGCACCGACAACTCTGGCGGCACCACGCGACTTTTGG ACTCTCCGATACACTAGTGGTCTTGAGGATGGCAGTCTTGTGGTAATGCT TCTTTTTTTTTGTTACTATGATGTTATCATTTATGTTAGTCTTGTCAATT CTATTTGCTTATTCTGTTTGGATCAGACAACTTATGTTAGGTGCTACTTG ATTGCCCTCTCAGGATATCTATTGTGCTCACAGTTGGTAACTGTTGTTTC TTGTCTTGTTTTGTAGATCTGTGAGAGATCATTGACACAATCGACTGGAC ACTACTACAAAACATAGATATTGTAACATATTCTTGTAACGCATTCGTCA AAGTGTTCCAAAGAAATTGTATAGTAACACAAAACAATGTGTTACAGACT AGGTTTGTAACACAATGCGTTTGTTTTATAAAAATGTGTTACTAACAGTG ATTACAGTAACACAAAATTAATGTTCCCAGTAAAATGTTACAAAAGT
back to top

Coding sequence (CDS) from alignment at Sh_006L22_contig-1:34474..37870-

>Sh_006L22_contig-1_t000080 ID=Sh_006L22_contig-1_t000080|Name=Sh_006L22_contig-1_t000080|organism=R570 Sugarcane cultivar|type=CDS|length=951bp|location=Sequence derived from alignment at Sh_006L22_contig-1:34474..37870- (R570 Sugarcane cultivar)
ATGGCGATGGTGGTGGTCGGGGGCGGCAAGGACCGGTCCTCGCCTGGCGG
CGGTGGGGCGCCGCAGGTGGACACAGGCAAGTACGTGCGCTACACCCCCG
AGCAGGTGGAGGCGCTCGAGCGGGTCTACAGCGAGTGCCCCAAGCCCAGC
TCGCTGCGCAGGCAGCAGCTCATCAGGGAGTGCCCCATACTCAGCAACAT
CGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACCGCAGGTGCCGCGAGA
AGCAGCGGAAGGAGGCCTCGCGCCTGCAGACTGTGAACCGGAAGCTGACT
GCGATGAACAAGCTGTTGATGGAGGAGAATGACAGGCTGCAGAAGCAGGT
CTCCCGACTCGTCTACGAGAATGGGTACATGCGACAGCAGCTCCATAATC
CTTCTGCTGCGACCACAGACACGAGCTGTGAGTCTGTGGTCACAAGTGGT
CAGCACCACCAACAGCAAAACCCAGCAGCTCCGCGTCCTCAACGGGACGC
GAATAACCCAGCTGGTCTACTAGCTATTGCTGAGGAGACCTTGGCAGAGT
TCCTGTCGAAAGCGACAGGAACTGCTGTCGATTGGGTGCAAATGGTTGGG
ATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTG
TAGTGGCGTAGCAGCCCGAGCTTGCGGCCTAGTGAGCCTTGAGCCCACAA
AGGTCGCGGAGATCCTCAAGGATCGCCCTTCTTGGTACCGCGACTGCCGG
TGCGTGGATATCCTCCATGTTATCCCTACGGGTAACGGTGGAACTATCGA
GCTTATCTACATGCAGACTTACGCACCGACAACTCTGGCGGCACCACGCG
ACTTTTGGACTCTCCGATACACTAGTGGTCTTGAGGATGGCAGTCTTGTG
ATCTGTGAGAGATCATTGACACAATCGACTGGACACTACTACAAAACATA
G
back to top