Sh_007H06_t000030

Overview
NameSh_007H06_t000030
Unique NameSh_007H06_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_007H06contigSh_007H06:52237..55271
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_007H06_g000030Sh_007H06_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_007H06_p000030Sh_007H06_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_007H06_t000030 ID=Sh_007H06_t000030|Name=Sh_007H06_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=1128bp
ATGGAGCTGGGAAGCGCCGTTTCGGCGCACAGATGCAGCAGCTACACCGC
CACCTACACCCACTGTTCCATAGGCTTCTCCCCACGGGTCCGCACCACCA
GCTGGATCCGCGCGGCGACTGAGGGCGACGACGGCGGGGCAGACCGGCGA
CGGAGAGGCGCCAGCTTCGCCGCCGATGGGCCCAGGGTCGTCGAGGTCAC
CGCTGCCCCCGTGGCTACTAGCGGCGGAGGCGCCGGCGGAGCAGCCGGGA
GCGCGGGGTTCGGAGCGCGGGACGCCGAGCTCGCCATGTGGGACAAGCTC
GGGGCGGTCGTCAGGCTCAGCTATGGCATTGGGATCTACGGAGCCATGGC
GCTCACGGGGAGATTCATATGTCAAATGGCCGGGATTGACTGCACGGGGG
GCTTCCATCCATCTCTCACGGCACTTGTCGAGGGGCTTGGTTATGCAGCT
CCACCTATCATGGCTCTGCTCTTCATCCTTGATGATGAAGTTGTCAAGTA
TTCGCCTCACGCGCGTGCCATCCGTGATGTGGAGGATGAGGAGCTTCGCA
GCTTCTTCTATGGCATGTCACCATGGCAGTTCGTCCTCATCGTGGCTGCT
AGCTCAGTTGGTGAGGAGCTGTTCTACCGTGCAGCTATTCAGGGAGCATT
GGCTGATATTTTCCTGAGAAGCACGGAGCTAATGAAAGATGCTCGAGGGA
TTGCATCACTGAGTGGTATTGTTCCTCCTTTGGTTCCATTTGCTCAAACG
TTCGCAGCAGTCATCACTGCAGCCCTTACAGGAACCCTCTACTATATCGC
CACAGCTCCGAAAGACCCTACATATGTGGTGACACCAGCAACGCGTTCGC
GCACAGGGCGGGAGAACCTCAAGAAACTATTTGCAGCTTGGTACGAGAGG
AGGCAAATGAGGAAGATATACTCCCCGCTTCTAGAAGGAATCTTGGCTTT
CTACCTTGGCTTCGAATGGATCCAGACCGACAATATCCTGGCACCTATGA
TCACCCACGGCATATACTCCACCGTTGTCCTTGGCCATGGGCTCTGGAAA
ATCCACGACCACCGGAGAAGGCTACGGCAGCGGATTCAGCAGGTCAGAAG
TCAAGGGAGCAGCTCAGACACATTGTAA
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protein sequence of Sh_007H06_p000030

>Sh_007H06_p000030 ID=Sh_007H06_p000030|Name=Sh_007H06_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=376bp
MELGSAVSAHRCSSYTATYTHCSIGFSPRVRTTSWIRAATEGDDGGADRR
RRGASFAADGPRVVEVTAAPVATSGGGAGGAAGSAGFGARDAELAMWDKL
GAVVRLSYGIGIYGAMALTGRFICQMAGIDCTGGFHPSLTALVEGLGYAA
PPIMALLFILDDEVVKYSPHARAIRDVEDEELRSFFYGMSPWQFVLIVAA
SSVGEELFYRAAIQGALADIFLRSTELMKDARGIASLSGIVPPLVPFAQT
FAAVITAALTGTLYYIATAPKDPTYVVTPATRSRTGRENLKKLFAAWYER
RQMRKIYSPLLEGILAFYLGFEWIQTDNILAPMITHGIYSTVVLGHGLWK
IHDHRRRLRQRIQQVRSQGSSSDTL*
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mRNA from alignment at Sh_007H06:52237..55271+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_007H06_t000030 ID=Sh_007H06_t000030|Name=Sh_007H06_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=3035bp|location=Sequence derived from alignment at Sh_007H06:52237..55271+ (R570 Sugarcane cultivar)
GCACGCGATCACCGTCAAAATCAGGCGGACGACTACTAGCACTACTGCAC TAGACGAGGAAACTAGCGGCGGCCGGAGAGGAAGGAAGAGACCTGCATTG CGCTGCTGGTCTCCATCCATCCATTTGTTTTGTCCGCTACTGTCGTTCCA GTAGGAGTATTGCTTATTTACCCCTCCTCCTCCTCCACAACGTCCGTCCG TGTCCAGATCATCAGAGCCAGAGGGCCAAACGGAATAATCTATTCCCGGC GATAAACAAACAAAACAAAGTATCTTCTCCGTGATTGTCTGCGTGCGGGT GCGGTGTGCCGGCCATTTGCAGCTGTTCGTTCTCCCGGCTCCTCCTCTGC TAGTGCTAGCTCTAGTTCGTCGCCCCTGCGCAGCAGAGAGATTCATGGAG CTGGGAAGCGCCGTTTCGGCGCACAGATGCAGCAGCTACACCGCCACCTA CACCCACTGTTCCATAGGCTTCTCCCCACGGGTCCGCACCACCAGCTGGA TCCGCGCGGCGACTGAGGGCGACGACGGCGGGGCAGACCGGCGACGGAGA GGCGCCAGCTTCGCCGCCGATGGGCCCAGGGTCGTCGAGGTCACCGCTGC CCCCGTGGCTACTAGCGGCGGAGGCGCCGGCGGAGCAGCCGGGAGCGCGG GGTTCGGAGCGCGGGACGCCGAGCTCGCCATGTGGGACAAGCTCGGGGCG GTCGTCAGGCTCAGCTATGGCATTGGTCAGTACTTGCTACCACCCTTGCT TCATCTACTAGTTCAATTTGTCGATGTCTGCATCATGAGCATGCATGCAT TCAATTAATCCTCCTTGTCAATCTGTCGATGTCTGCACAGGGATCTACGG AGCCATGGCGCTCACGGGGAGATTCATATGTCAAATGGCCGGGATTGACT GCACGGGGGGCTTCCATCCATCTCTCACGGCACTTGTCGAGGGGCTTGGT TATGCAGCTCCACCTATCATGGCTCTGCTCTTCATCCTTGATGTATGTAC ACCGTCCTCTCATTCTCAGCTCTACTCAGATCACCGGCCCCATTTCGGTT CCTTTTAATTTGCCTTTAATTTTATCTTTATCTCTGCTTAACTAGTACTA GTAGAGAACTTCTGCATGTGGTTTAATTTCTGCTTTCAGGATGAAGTTGT CAAGTATTCGCCTCACGCGCGTGCCATCCGTGATGTGGAGGATGAGGAGC TTCGCAGCTTCTTCTATGGCATGTCACCATGGCAGGTACTTAAATCACCC TTGGCATTCTTTGGTTTGCAGTGTGGCTCTCGATGATCTGTCAGTGTTGG CTGTACATATTTTCCACTCAAATTTCCAAGCCAAAATAGATTCTAGTGAA CTATGGAACGTGTGATCAGTTGATCACTCTAGCAACACTATCCTAGATGT GTCAGCTGTTATGTGGAGAATGGCTTGGAACTCCTAGCCAAAATCAATAT AAAATGGGGAGTATATAATATTTTCTTATAATTGTAGTTCGTCCTCATCG TGGCTGCTAGCTCAGTTGGTGAGGAGCTGTTCTACCGTGCAGCTATTCAG GTATGGGCTGCATGTCCATTCTCATTATGGTTATTAAGTTTTACTTCTTT ACAACTATGTGGAGGAAACTGTATTCCTTTGCAAGTAATTAGCATATGTT TTTTCACTTCATTTATTAATTTGCTTATATTGTTGATGGTATGAACACTG AAATTGTAGGGAGCATTGGCTGATATTTTCCTGAGAAGCACGGAGCTAAT GAAAGATGCTCGAGGGATTGCATCACTGGTACATATATGTACTTTTCAGC TGAATTCAGATGAAACTGAATTTTGTAATATACAAGACCATCTAATATAT GTCTTTATGAAACTGTACCGATGCAATGCAGAGTGGTATTGTTCCTCCTT TGGTTCCATTTGCTCAAACGTTCGCAGCAGTCATCACTGCAGCCCTTACA GGAACCCTCTACTATATCGCCACAGCTCCGAAAGGTGATCGATGTTCTAC TGATGACAGTCCTAGTTTGCATGAATATGTTAATTTCTTTTGTTTTTTTT AGGATGGATAGAATCAACGATATTGATCCTGAAAACTATTAATAACCTAT ATATATGAAGTGACATGTGTATTGTTCATTTAAATTTCAGACCCTACATA TGTGGTGACACCAGCAACGCGTTCGCGCACAGGGCGGGAGAACCTCAAGA AACTATTTGCAGGTTTGTTTGGCCATATAGAGAGAGAGAGAGAAAGAGAG ATTCTTTTGTTGCAGTTACAATCTGTGCTAATGTTGAAAAATAGTTAAGT GTGCTAGAGAGACATGTGCAGTCCTTTGACATGTCCATGGATTTGCAGCT TGGTACGAGAGGAGGCAAATGAGGAAGATATACTCCCCGCTTCTAGAAGG AATCTTGGCTTTCTACCTTGGCTTCGAATGGATCCAGGTACGGTCCATGC ATGATATCAGATTTAGGTTCATCATCAGGAATATAATTCATGCAACGATT GACACTATCGTGTGTGATATGGATACAATGCAGACCGACAATATCCTGGC ACCTATGATCACCCACGGCATATACTCCACCGTTGTCCTTGGCCATGGGC TCTGGAAAATCCACGACCACCGGAGAAGGCTACGGCAGCGGATTCAGCAG GTCAGAAGTCAAGGGAGCAGCTCAGACACATTGTAACTGCAGCATGTGGC CGATAGATCGACGTGGTCTACTGCTGGATAGCTAGCTGCTGATTGCACGT ACTGGGTGATCGTCTGATCGATCGACCGATCAATCAGAAGACCAGAGGCG TCTGACAAGTTTTGATCTAGTTAATTAACCAACAAGATAGATAAAAGATT GGGGAAAAATATGATGCATGTAGTCATGTAATGTAATGTAATGTAGATAC AATCTGTACATATATGGATAAATATACGCAGGCTGTAATCAATATAGGAA GTATAGTATACGATAGCAACTTCCAAGTATGTAATAATTCTAGTATATCA CGTGTGTGCAAGGAAGATAGCAGCCCACTCTTTTT
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Coding sequence (CDS) from alignment at Sh_007H06:52237..55271+

>Sh_007H06_t000030 ID=Sh_007H06_t000030|Name=Sh_007H06_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=1128bp|location=Sequence derived from alignment at Sh_007H06:52237..55271+ (R570 Sugarcane cultivar)
ATGGAGCTGGGAAGCGCCGTTTCGGCGCACAGATGCAGCAGCTACACCGC
CACCTACACCCACTGTTCCATAGGCTTCTCCCCACGGGTCCGCACCACCA
GCTGGATCCGCGCGGCGACTGAGGGCGACGACGGCGGGGCAGACCGGCGA
CGGAGAGGCGCCAGCTTCGCCGCCGATGGGCCCAGGGTCGTCGAGGTCAC
CGCTGCCCCCGTGGCTACTAGCGGCGGAGGCGCCGGCGGAGCAGCCGGGA
GCGCGGGGTTCGGAGCGCGGGACGCCGAGCTCGCCATGTGGGACAAGCTC
GGGGCGGTCGTCAGGCTCAGCTATGGCATTGGGATCTACGGAGCCATGGC
GCTCACGGGGAGATTCATATGTCAAATGGCCGGGATTGACTGCACGGGGG
GCTTCCATCCATCTCTCACGGCACTTGTCGAGGGGCTTGGTTATGCAGCT
CCACCTATCATGGCTCTGCTCTTCATCCTTGATGATGAAGTTGTCAAGTA
TTCGCCTCACGCGCGTGCCATCCGTGATGTGGAGGATGAGGAGCTTCGCA
GCTTCTTCTATGGCATGTCACCATGGCAGTTCGTCCTCATCGTGGCTGCT
AGCTCAGTTGGTGAGGAGCTGTTCTACCGTGCAGCTATTCAGGGAGCATT
GGCTGATATTTTCCTGAGAAGCACGGAGCTAATGAAAGATGCTCGAGGGA
TTGCATCACTGAGTGGTATTGTTCCTCCTTTGGTTCCATTTGCTCAAACG
TTCGCAGCAGTCATCACTGCAGCCCTTACAGGAACCCTCTACTATATCGC
CACAGCTCCGAAAGACCCTACATATGTGGTGACACCAGCAACGCGTTCGC
GCACAGGGCGGGAGAACCTCAAGAAACTATTTGCAGCTTGGTACGAGAGG
AGGCAAATGAGGAAGATATACTCCCCGCTTCTAGAAGGAATCTTGGCTTT
CTACCTTGGCTTCGAATGGATCCAGACCGACAATATCCTGGCACCTATGA
TCACCCACGGCATATACTCCACCGTTGTCCTTGGCCATGGGCTCTGGAAA
ATCCACGACCACCGGAGAAGGCTACGGCAGCGGATTCAGCAGGTCAGAAG
TCAAGGGAGCAGCTCAGACACATTGTAA
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