Sh_007H06_t000040

Overview
NameSh_007H06_t000040
Unique NameSh_007H06_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_007H06contigSh_007H06:67398..69689
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to OSIGBa0140J09.11 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_007H06_g000040Sh_007H06_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_007H06_p000040Sh_007H06_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_007H06_t000040 ID=Sh_007H06_t000040|Name=Sh_007H06_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=378bp
ATGGCGGAGGAGGTGGTGAAGCAGAAAGAGGAGGCGGCTGCTGGTGATGT
GAGCCTGAAGGAGCTGTCGAAGAAGCTCAACGACTTCGCCAAGGAGAGGG
ACTGGGAGCAGTACCACAGCCCCCGGAACCTGCTGCTCGCCATGATTGCT
GAAGTCGGGGAGCTGTCAGAGCTGTTCATGTGGAAAGGGGAGGTGCGGAA
GGGCCTCGCGGACTGGGACGAGGCGGAGAAGGAGCACCTCGGCGAGGAGC
TCTCCGACGTGCTGCTCTACCTGATCCGCCTCTCCGACATGTGCGGCGTC
GACCTCGGCGACGCCGCTACCAGGAAGATCGTCAAGAACGCCGTCAAGTA
CCCGGCGCCATCCAAGGAAGGCGCCTGA
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protein sequence of Sh_007H06_p000040

>Sh_007H06_p000040 ID=Sh_007H06_p000040|Name=Sh_007H06_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=126bp
MAEEVVKQKEEAAAGDVSLKELSKKLNDFAKERDWEQYHSPRNLLLAMIA
EVGELSELFMWKGEVRKGLADWDEAEKEHLGEELSDVLLYLIRLSDMCGV
DLGDAATRKIVKNAVKYPAPSKEGA*
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mRNA from alignment at Sh_007H06:67398..69689-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_007H06_t000040 ID=Sh_007H06_t000040|Name=Sh_007H06_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=2292bp|location=Sequence derived from alignment at Sh_007H06:67398..69689- (R570 Sugarcane cultivar)
ATGGCGGAGGAGGTGGTGAAGCAGAAAGAGGAGGCGGCTGCTGGTGATGT GAGCCTGAAGGAGCTGTCGAAGAAGCTCAACGACTTCGCCAAGGAGAGGG ACTGGGAGCAGTACCACAGCCCCCGGAACCTGCTGCTCGCCATGGTTTGC ATCTTCTTCTTCTCTCCGCTCTCTACTAGTCTCTAATCTAAATCTTATCC TGTGTCGCCCTTCGTCTTCTCGTGTGTTTCGTCAACATGCATCTCTTCAA AACTCAAGAGGTTAGGGTTTTCTATGTGTTTGTCACTCGTCTTTTTTCCC CTCGGGCGATGATTTTGGTTTCTTTCGTTAATCACTAGTAGATCGAGAAT TACGCCCCCAATATTCAGTCCACGAAAGCATAATCTGGGCAAGTAGGATG GTCCCCATTGCCGTTGGGGACTCGTTTTCCTCGTGACGCCGAATGATCAA TGGTTTCAATTAGGAAATCTGTTAACGTGTTTTGGATGTATAATAACTGC ACACTGCACACCGCACAACACGTCATGGCTAAAAAGCATGCCTTTATTAG CTTTCAGGGCGTGACCATGCATGGCATTTTCTTCATGATCTCCTGCAGTA AAATACTACGCATGTCCAAAAATTATTTTGAGTTCCGCATCTGTATTTTT ATTTTCAGTATGGCATAGTGGTAACTCAAGTATGAATTTGGTTAAGTCAC CAAAAAAAGTATGAATTTGGTTACAGTACTTCACGACATATACAGTACTA CTACTACGCGTTATTGTAGTCCAAAAATACTGTACTTCACGACATATACA GTACTCCGCGTTACTGTTGTGATTAAACTAAACAAAATATTTGGTTACCA CTGCACATCTCAAGATGAGAGGGCCGGAAACAGTACCCATCCTCGTCTGA GTGAGCAGGAAGCATCTCTAGAAGACCAGAAGTCTAGAATATCATGTGCA CATAGACAATGTCTCCATCTTCTAAAAGAAGAGAACTATATACTAGTAGG TCGCAGTTAACGAGGGGTATCATAAAAAATTCTTCATTCCAAGGCCACCA TAGGTTTGTTATCTGTATAGATTAAGTTATCACCATATAATGCGTTCTCT TTTGACCAACTGTTCATTAAGATTCTCCTTTGATTATTTCTTTGTTCGAA GTAGTGCGACTAGCTAGATTCTTGAGTTTATTCGCTTCACTTGACTAACT AACTGTATGCATGTGGACACAAGGTGATGCCGCCGCAATGCATCTAGAAT TTCGTTTCACCTTGTACCTTAGAATTGATCATGCTCGTATTTATACCTCC CAGTTACATATCTACACGTGTATCACAAGGTGATGATGCTGCCGCAGTGC ATCTTGAATTTCTTCAGAATTTTTGTTTTGGAAAAGAAGGAAACTTTTTT TTTCTTTTGAAGATTTAGAAGGAAACTTCTTCATTACCACATTGACGTGG ACAGGACCTCGAGTCGATCCCAAAATACAATCATTCTGCATTATTCCCTC TCATCCCCTGATATTTTTGGAGGCTTTTAGCGTGCTGCTCCTGAAAGATC ATGCCGTCCAGGTCCAGCCAGCCATGTGTCATGTGTGGGTTGGTTCATGG GAGCAAAATGGGACAAGCAACTAATCTCCGCACTGCCCATGGCCTGATGA GCGGCTGAACTGGAATGCAACTTTCAGGTGTCACACATCTCGGATAGTCG GATGCCACGTGGCCCTGGCCCCTGTCGAAGCAAATTTCCCGCGTCCCCGT TGGATACTTGGGTCTTATACTACGCAGATTGCTGTTGTCACCTCTGACGT GGTTATGTTGGTTCAGACATCAGGGTCACTGCTGATTTAATTTTGCTGAA TGATCGCTGTCATCTTGTGACTGAATTTTCTGAACCTGAACTGAAAGGAA TGCGATTCGCTCCTCGTCATTCCGATTCTTTTTTATATATATAATATAAA AAAGCATCGACCGCACATTCTCGCTTGCAAAAAAAAAGGACTTTTTATTT GTTCCCTTTCTTAAGGAAGGCGAGAGCTTAATGATTTGTTTTGTTTTGTG CCTGACAGATTGCTGAAGTCGGGGAGCTGTCAGAGCTGTTCATGTGGAAA GGGGAGGTGCGGAAGGGCCTCGCGGACTGGGACGAGGCGGAGAAGGAGCA CCTCGGCGAGGAGCTCTCCGACGTGCTGCTCTACCTGATCCGCCTCTCCG ACATGTGCGGCGTCGACCTCGGCGACGCCGCTACCAGGAAGATCGTCAAG AACGCCGTCAAGTACCCGGCGCCATCCAAGGAAGGCGCCTGA
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Coding sequence (CDS) from alignment at Sh_007H06:67398..69689-

>Sh_007H06_t000040 ID=Sh_007H06_t000040|Name=Sh_007H06_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=378bp|location=Sequence derived from alignment at Sh_007H06:67398..69689- (R570 Sugarcane cultivar)
ATGGCGGAGGAGGTGGTGAAGCAGAAAGAGGAGGCGGCTGCTGGTGATGT
GAGCCTGAAGGAGCTGTCGAAGAAGCTCAACGACTTCGCCAAGGAGAGGG
ACTGGGAGCAGTACCACAGCCCCCGGAACCTGCTGCTCGCCATGATTGCT
GAAGTCGGGGAGCTGTCAGAGCTGTTCATGTGGAAAGGGGAGGTGCGGAA
GGGCCTCGCGGACTGGGACGAGGCGGAGAAGGAGCACCTCGGCGAGGAGC
TCTCCGACGTGCTGCTCTACCTGATCCGCCTCTCCGACATGTGCGGCGTC
GACCTCGGCGACGCCGCTACCAGGAAGATCGTCAAGAACGCCGTCAAGTA
CCCGGCGCCATCCAAGGAAGGCGCCTGA
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