Sh_007H06_t000070

Overview
NameSh_007H06_t000070
Unique NameSh_007H06_t000070
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_007H06contigSh_007H06:85269..89757
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to OSIGBa0140J09.7 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_007H06_g000070Sh_007H06_g000070R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_007H06_p000070Sh_007H06_p000070R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_007H06_t000070 ID=Sh_007H06_t000070|Name=Sh_007H06_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=1368bp
ATGGAGCACGTAGTCGGGGGCAAGTTCAAGCTTGGGAAGAAGATCGGGAG
CGGATCCTTTGGGGAGCTCTACCTCGCTGTGAACGTGCAGAATGGCGAGG
AGGTGGCTGTCAAACTGGAATCGGTCAAATCACGACATCCACAGCTTCAC
TATGAATCAAAACTATACATGCTTTTGCAGGGTGGAACTGGGATTCCACA
TCTTAAGTGGTTCGGGGTGGAGGGGGAGTACAATGTCATGGTGATTGATC
TGCTTGGTCCAAGCCTGGAGGACTTATTTAACTACTGCAGCAGAAAGTTC
TCCCTTAAAACAGTACTAATGCTTGCTGATCAGATGATCAGTAGAGTAGA
ATATATGCACACGAAGGGGTTTCTACATCGTGATATCAAGCCCGATAATT
TCCTCATGGGTTTAGGACGTAAAGCAAACCAGGTATTTGTTATCGACTAT
GGCCTTGCGAAAAAGTATCGAGATCTCCAAACTCATAAGCACATACCATA
CAGGGAAAACAAAAATCTCACAGGAACAGCACGATATGCCAGTGTAAATA
CTCATCTTGGAGTAGAGCAAAGCAGAAGAGATGATCTGGAATCTCTTGGT
TACGTGCTGATGTATTTCTTAGGAGGAAGTCTTCCTTGGCAAGGCCTGAA
AGCTGGCACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAAATGC
TGACACCCGTTGAGGTCCTCTGTAAATCGTATCCATCAGAGTTTACTGCA
TACTTTCATTACTGTAGATCACTACGATTTGAAGATAAACCGGATTACTC
CTATTTGAAGAGACTCTTCCGTGACTTATTTATCCGCGAGGGGTACCAAC
TAGATTATGTATTTGACTGGACCATTATGAAGTATCCTCAGTTTAGAGAT
AAAAGCAAACTTCAGCCTAGCGGCAAGATTAGTGGGTTGGCAGGCCCTTC
TGCAGAAAGGACTGATAGAACTGCAGCTGAAGCTTTGTTTAGAAGAACTG
GATCTGGTTCTGGTCACAATCGAGAACACACCAAGCACAGAAGTCTTCTA
GAGTCACTGATGCCATCCAAGGTGACTGTTGATTCGGATAGAACAAGGCC
ATCATCATCATCGCGCAACGGAAGCACATCAAGAAGAGCTGTCCTTCCAT
CAGGCAAACCAAGCTCTTCTGGAGATCCAAGCGACCCAAACCGCATGGGT
CGCCTGGTCCCGAGTAGCAGCAGCCGCCCACCGACTGCCCAAAGGGCACA
TCCTTCAGGTGGAACTGAGATGAGATCATCGTCTTTGTCAAAAATCGGAA
GGTCTTCACATGATGACGCTATCAGGAACTTTGAGCTCCTCTCTCTTGGT
GCTGACAGGAGAAAATAA
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protein sequence of Sh_007H06_p000070

>Sh_007H06_p000070 ID=Sh_007H06_p000070|Name=Sh_007H06_p000070|organism=R570 Sugarcane cultivar|type=polypeptide|length=456bp
MEHVVGGKFKLGKKIGSGSFGELYLAVNVQNGEEVAVKLESVKSRHPQLH
YESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCSRKF
SLKTVLMLADQMISRVEYMHTKGFLHRDIKPDNFLMGLGRKANQVFVIDY
GLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLG
YVLMYFLGGSLPWQGLKAGTKKQKYDRISEKKMLTPVEVLCKSYPSEFTA
YFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQLDYVFDWTIMKYPQFRD
KSKLQPSGKISGLAGPSAERTDRTAAEALFRRTGSGSGHNREHTKHRSLL
ESLMPSKVTVDSDRTRPSSSSRNGSTSRRAVLPSGKPSSSGDPSDPNRMG
RLVPSSSSRPPTAQRAHPSGGTEMRSSSLSKIGRSSHDDAIRNFELLSLG
ADRRK*
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mRNA from alignment at Sh_007H06:85269..89757+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_007H06_t000070 ID=Sh_007H06_t000070|Name=Sh_007H06_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=4489bp|location=Sequence derived from alignment at Sh_007H06:85269..89757+ (R570 Sugarcane cultivar)
GCACTGCGGCGGGGCGCGTCGCCGCCGCCGCAGCTCGGCACGGGGGCTCG TCGGGTCGGCAGTCGCTTTCGGGTCGGGCGCTGTCGAGGCCAGTGGTGCC GGGGCAATGCGGTCAGTTCGTGGAGCTGTTTGAGGCGCTTGGGCTGGGAT CTGAGTGAGGGTGCCAGGTAGTAGGGGAAGCGAGCGAGCTTCTGTCGGTG GGGAGTTGGTGGTGGTTGCAGCAGCGTAGGGCGCGCGTTTGGCTGCCGGG ATGGAGCACGTAGTCGGGGGCAAGTTCAAGCTTGGGAAGAAGATCGGGAG CGGATCCTTTGGGGAGCTCTACCTCGGTGCGTCCCGGTGATGGGTCCTGC TTGCTTTGTGGAGCTCACTTTTCCGTTTTCTCCGGGCGTGCGTGCGTGCG TGCGTGCTTCGGTGTGTTCGTGCTTCTGACCGTGTTTGTTTGATTTGTGT GCAGCTGTGAACGTGCAGAATGGCGAGGAGGTGGCTGTCAAACTGGTATG CCATGATTTTAGTGTCCACTATCCCTGTCTAGGTGAACAGTTCTGTGTTA GAAGTTTACTCTAGTTGGAGTAACTGAAATCTGTAGTTAGCCTAATCGGT TGCTACTCACCTTGCAAGCATTATTGCATATTAGGAGCTCGGCAATTACA GCACAAACGTTCGTGTACAGAAGTGATGTTATCCAGCGTTGTCTATGCCT CTTGCCACAGAATTGTCAACAGTGGGACCATTTGGATCCTCGAATAAGCT TCATCCTTGTGAAATGAATCATTTGTAGCACACAAATTTATTCTGGACAA AGGTTTGCTCATAAGCTCATTTGAGTCGATGAACCTTTAGCACTCCTCTG AAGTGAGGGTATCAATGCTGAAAAGCAGCCATTGGAAAGTAATCTCTTGT TTGTTCTGATTGGATTATCCTCACAGTTGGGTTTAGCTTTTTTGGAGTTA TGTTTTCTCTATATACACTAAACTAAATTAATGTGTTAGACTGTTAGATG ATGGTGAGTATTGCTCCAAGGCTGTAATGTCAACAGTGGCATACCAAACA ATATTTTTGGCACAGATATGTTCAGTGCATCTTCATAATTGCTAGGTAGT TGATCTTTTTTAGAAGAACTTGATTTGTGGTCATTGATATTGTTTTCCTT AGTTGCTGTTAGGAATTTAGGACTGCTTGCTCACCTTATTTGATGTGTGT ATAACTTCTTATTAGGAATCGGTCAAATCACGACATCCACAGCTTCACTA TGAATCAAAACTATACATGCTTTTGCAGGGTGGAAGTAAGTGCGACCACA GTAGAATTTGGTTAGCTCAATTACACTGGTATTTTACTGATCTGTTTCTT TTCTGCCCTGATTTCTAGCTGGGATTCCACATCTTAAGTGGTTCGGGGTG GAGGGGGAGTACAATGTCATGGTGATTGATCTGCTTGGTCCAAGCCTGGA GGACTTATTTAACTACTGCAGCAGAAAGTTCTCCCTTAAAACAGTACTAA TGCTTGCTGATCAGATGGTGAGTCTTTCTTATGGTTCTACATTATTCTTG TATTTGTTTTGGACCTTTTGAAACCACATACTGATGTAGTGTCAAAACAT TCTCCAGTTTCCATTTCATTGGTCTTTGCAAACAAAAATAACATGCCTTC TTCATGTGGGATACAGATCAGTAGAGTAGAATATATGCACACGAAGGGGT TTCTACATCGTGATATCAAGCCCGATAATTTCCTCATGGGTTTAGGACGT AAAGCAAACCAGGTATGTGCTACTTCTGCTAAACCTCATTAAGAGTCAGT TTTCCTATTGGAAGCATTTTGTCTACCAAATTGAACAATGGTGAATCAAA AGATCTTGAATATGAGACACTTTAAGAATCCTATTATCTGATGTCTAATG ATAACAGTGAAGTTGAACGACGTTTCTTACTATGAGAAATGACTATTAGC TTGCTGGCAAAGTTACCATCTGAAAACTGTTGTGCACACTCCACAGGTAT TTGTTATCGACTATGGCCTTGCGAAAAAGTATCGAGATCTCCAAACTCAT AAGCACATACCATACAGGTAAAGGAGAATCTATGCCTATAAAATTATAAA GCTACTTCTAACTTAGCATCCTGAAAGTGTGGAGATTGTTCAGGTGTACC ATCCCAATTAGATCCTGTAGTTTTGTGTCTGTATTCCTGTTCACTCAATG TTTTTGTTGTCATTGGCATTTTGACATAGTTCACGCATACCATAAACCTT TCTGTGGTGTACTATGCAACAGCTTATTACATGACTGGGTTCTTGGTTCT GAACCTACCAGAAAATTGAAATTTTGGATCAATTGTACCTTTTGTCTTGG GCTAAATTTGGTCATTCTTGAAAGGTTAATCTGGTACCTGGCATAATAAG ACGATGTTTTGCACTGGTTTTAACCGAAGTGGTCAAGTTGGTTCATATAA GCGGGCCAGGGGCAGCCGACAATACTCAAACAATGTGTGTAGAAAATTAT TATTATAAAAAATAGTAGGAAAATACGCATGCTATTCCTGTTCATAATAG GACAATGTTTTGCACTGCTGTACTGGTTTGCATTAACTTTTCTTCTTTGA CATGAAAATTCCTGTTCAATTTTTTTCCTAGAGGTTCAATTTTTTGGTTC TAAGCTTCTAGCCATAACTACTTTATGTGTGTTATCATTTAAGAAGCTAA TACAATTTGTCAATTTCTTCGTCATGCCACAGGGAAAACAAAAATCTCAC AGGAACAGCACGATATGCCAGTGTAAATACTCATCTTGGAGTAGGTGAGT TTATGGCTTGTAAATACAGATATGTGTATCATCAGTATCTGAGCATTAAA TGAGAGTCTATAGGGCAAAGGGAACAGGGAATACAAATATTCTGAACAAA TTGAAACTCTTCAAAACCTGTAACACTAACAAATCTGAATGCCTTGATAG ATGAATTTGGGTTAACCTTTCTTCATTCCTTCTAGAGCAAAGCAGAAGAG ATGATCTGGAATCTCTTGGTTACGTGCTGATGTATTTCTTAGGAGGAAGG TATGACATGATTTTTCTTCACTAGGATTTCCTATTTTCTTGTGCACCATA ACATTTTCTTGTCATCTTGGAATCCCCCAGTCTTCCTTGGCAAGGCCTGA AAGCTGGCACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAAATG CTGACACCCGTTGAGGTACTTGATTTTTTAGATCAAGGGACAGTGCATTG CGAAGTCCCCATGATCCCGTCACTTAATGTGCTGTTCAAACAACATGTTA TGGTATCGATTTTCTGTGATAATAACATGCCAAATTCCTAAACAGGTCCT CTGTAAATCGTATCCATCAGAGTTTACTGCATACTTTCATTACTGTAGAT CACTACGATTTGAAGATAAACCGGATTACTCCTATTTGAAGAGACTCTTC CGTGACTTATTTATCCGCGAGGGTATGGTTAAGCATTAGAAATGTATAAT TGATGTTCCTTGCACCTCTATTTTCGTTTTCTTTATGTGGCTTATTCTGA ATACTTGCAGGGTACCAACTAGATTATGTATTTGACTGGACCATTATGAA GTATCCTCAGTTTAGAGATAAAAGCAAACTTCAGGTATGCACGCATGTTA TTCATTTGTAGCCCGTCATTAACCAATGCAATTTTCACTGGGCTGACATT TTGCATTTGTTCTTGGCAACTAGCCTAGCGGCAAGATTAGTGGGTTGGCA GGCCCTTCTGCAGAAAGGACTGATAGAACTGCAGGTCCGTAAATCTTTGA GCTAGGAAATAAGTTGGTGAAATTTACCAAGTTTTTGTATCAACAAGTGG CACCACTACATCTCTGACAGATTATTTTCTGCAGCTGAAGCTTTGTTTAG AAGAACTGGATCTGGTTCTGGTCACAATCGAGAACACACCAAGCACAGAA GTCTTCTAGAGTCACTGATGCCATCCAAGGTGGTAAGATGTTTTGCTGTT CTGTACACCAGCTAATCGTTCTGCCGTGACTTCAGAAGATCTTACCACTA CATATTGTTTTCTATAGACTGTTGATTCGGATAGAACAAGGCCATCATCA TCATCGCGCAACGGAAGCACATCAAGAAGAGCTGTCCTTCCATCAGGCAA ACCAAGCTCTTCTGGAGATCCAAGCGACCCAAACCGCATGGGTCGCCTGG TCCCGAGTAGCAGCAGCCGCCCACCGACTGCCCAAAGGGCACATCCTTCA GGTGGAACTGAGATGAGATCATCGTCTTTGTCAAAAATCGGAAGGTCTTC ACATGATGACGCTATCAGGAACTTTGAGCTCCTCTCTCTTGGTGCTGACA GGAGAAAATAAGGAACTGACGAAATGGGACCCTGGATGATGAGTTGATGA CAATGGAGTGCTGGGGGTATTATGAGCAGGCAGCTCCAGTATTTGTATGT TGAAAAATATTCTTTTCAAAATAAAAGAGATGATTTAAC
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Coding sequence (CDS) from alignment at Sh_007H06:85269..89757+

>Sh_007H06_t000070 ID=Sh_007H06_t000070|Name=Sh_007H06_t000070|organism=R570 Sugarcane cultivar|type=CDS|length=1368bp|location=Sequence derived from alignment at Sh_007H06:85269..89757+ (R570 Sugarcane cultivar)
ATGGAGCACGTAGTCGGGGGCAAGTTCAAGCTTGGGAAGAAGATCGGGAG
CGGATCCTTTGGGGAGCTCTACCTCGCTGTGAACGTGCAGAATGGCGAGG
AGGTGGCTGTCAAACTGGAATCGGTCAAATCACGACATCCACAGCTTCAC
TATGAATCAAAACTATACATGCTTTTGCAGGGTGGAACTGGGATTCCACA
TCTTAAGTGGTTCGGGGTGGAGGGGGAGTACAATGTCATGGTGATTGATC
TGCTTGGTCCAAGCCTGGAGGACTTATTTAACTACTGCAGCAGAAAGTTC
TCCCTTAAAACAGTACTAATGCTTGCTGATCAGATGATCAGTAGAGTAGA
ATATATGCACACGAAGGGGTTTCTACATCGTGATATCAAGCCCGATAATT
TCCTCATGGGTTTAGGACGTAAAGCAAACCAGGTATTTGTTATCGACTAT
GGCCTTGCGAAAAAGTATCGAGATCTCCAAACTCATAAGCACATACCATA
CAGGGAAAACAAAAATCTCACAGGAACAGCACGATATGCCAGTGTAAATA
CTCATCTTGGAGTAGAGCAAAGCAGAAGAGATGATCTGGAATCTCTTGGT
TACGTGCTGATGTATTTCTTAGGAGGAAGTCTTCCTTGGCAAGGCCTGAA
AGCTGGCACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAAATGC
TGACACCCGTTGAGGTCCTCTGTAAATCGTATCCATCAGAGTTTACTGCA
TACTTTCATTACTGTAGATCACTACGATTTGAAGATAAACCGGATTACTC
CTATTTGAAGAGACTCTTCCGTGACTTATTTATCCGCGAGGGGTACCAAC
TAGATTATGTATTTGACTGGACCATTATGAAGTATCCTCAGTTTAGAGAT
AAAAGCAAACTTCAGCCTAGCGGCAAGATTAGTGGGTTGGCAGGCCCTTC
TGCAGAAAGGACTGATAGAACTGCAGCTGAAGCTTTGTTTAGAAGAACTG
GATCTGGTTCTGGTCACAATCGAGAACACACCAAGCACAGAAGTCTTCTA
GAGTCACTGATGCCATCCAAGGTGACTGTTGATTCGGATAGAACAAGGCC
ATCATCATCATCGCGCAACGGAAGCACATCAAGAAGAGCTGTCCTTCCAT
CAGGCAAACCAAGCTCTTCTGGAGATCCAAGCGACCCAAACCGCATGGGT
CGCCTGGTCCCGAGTAGCAGCAGCCGCCCACCGACTGCCCAAAGGGCACA
TCCTTCAGGTGGAACTGAGATGAGATCATCGTCTTTGTCAAAAATCGGAA
GGTCTTCACATGATGACGCTATCAGGAACTTTGAGCTCCTCTCTCTTGGT
GCTGACAGGAGAAAATAA
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