Sh_008F07_t000040

Overview
NameSh_008F07_t000040
Unique NameSh_008F07_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1071
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F07contigSh_008F07:28616..29686
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDisease resistance protein RPP13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F07_g000040Sh_008F07_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F07_p000040Sh_008F07_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F07_t000040 ID=Sh_008F07_t000040|Name=Sh_008F07_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1071bp
ATGACACCTAAAATCAAGTTTAGAAACCCAGAAATACACTGTTCAAAGTT
CGGGGAGGTGGCCTTGCAGCTCGGCGTCCAGCGCGACCACGCTTTCATTA
GGGATGAGCTCGAGATGATGCTGGCTTTTCTGATGGCCGCGCATGACGAG
CGCGATGAGCACATGGTTGTCAAGACCTGGGTGAAGCAGGTCCGCGATGT
CGCCTATGATGCCGAGGACTCCCTCGAGGACTTCGCCGTTCGTTTGGGGA
AGCCATCTTGGTGGCGTGTCTTTCGCACGTTGCTTGACCGGCGTCGTGTG
GCCAAGCAGATGAAGGAGCTCCGAGCCAAGGTTGAGGATGTCAGCCAGAG
GAATGCGCGCTACCACCTCATCAAGGGATCTGACACCAAGCCTACCACCA
GAACTGGTCAGTCCAGCATGATGACTGGTGAAACAATGTCAGGCCTGGAG
GAAGCAAGGATGGAGAAGGACCAGGGCAAAGCAAAAGTGGATCTCATTAG
GCTAATCAATAGGATGGATGAGAACCTTCAAGTGATTGGTATCTGGGGAC
CAAGTTATGTTCTCCAGGAGGCATCCATCATCAAACTAGCCTACGATGAC
CTAAAAAGAACGAAGAAGTTTGAATGCCATGCCTTGATTCAGATCATGCA
CCCCTTCAATCCAACTGAGTTTTTGAAAACCATCGCCAGGCAATTCTATG
TCGATTCTCTTGAAGAAACAGCGAGGATAACACAACAGGACTCTACTCCT
GGAGCCCAAGATTTGCGAAGGATGGGGGTGATGACAGAAGGTGATTTGGT
TGGTGCATTCAAGAAATATTTGAACAAGAAGAGGTACCTCATAGTGCTTA
CTGACCTATCCGATGTTGAGGAGTGGGACCAGATTAAGGCATTGTTTCCC
ATCAACAACAAAGGAAGCCGATTCATAGTGTGTGCACAACAAGTTGAAGT
TGCTAGCTTATGTGTTGGGCCAGAGATTATACTACTAGATCACAAACAAT
TGTCTTCTGACCAGGCACTTTATGCTTTCTACGACAAGGTAATATCCGAA
GCCCTGAATCGTCTAACTTAA
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protein sequence of Sh_008F07_p000040

>Sh_008F07_p000040 ID=Sh_008F07_p000040|Name=Sh_008F07_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=357bp
MTPKIKFRNPEIHCSKFGEVALQLGVQRDHAFIRDELEMMLAFLMAAHDE
RDEHMVVKTWVKQVRDVAYDAEDSLEDFAVRLGKPSWWRVFRTLLDRRRV
AKQMKELRAKVEDVSQRNARYHLIKGSDTKPTTRTGQSSMMTGETMSGLE
EARMEKDQGKAKVDLIRLINRMDENLQVIGIWGPSYVLQEASIIKLAYDD
LKRTKKFECHALIQIMHPFNPTEFLKTIARQFYVDSLEETARITQQDSTP
GAQDLRRMGVMTEGDLVGAFKKYLNKKRYLIVLTDLSDVEEWDQIKALFP
INNKGSRFIVCAQQVEVASLCVGPEIILLDHKQLSSDQALYAFYDKVISE
ALNRLT*
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mRNA from alignment at Sh_008F07:28616..29686-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F07_t000040 ID=Sh_008F07_t000040|Name=Sh_008F07_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1071bp|location=Sequence derived from alignment at Sh_008F07:28616..29686- (R570 Sugarcane cultivar)
ATGACACCTAAAATCAAGTTTAGAAACCCAGAAATACACTGTTCAAAGTT CGGGGAGGTGGCCTTGCAGCTCGGCGTCCAGCGCGACCACGCTTTCATTA GGGATGAGCTCGAGATGATGCTGGCTTTTCTGATGGCCGCGCATGACGAG CGCGATGAGCACATGGTTGTCAAGACCTGGGTGAAGCAGGTCCGCGATGT CGCCTATGATGCCGAGGACTCCCTCGAGGACTTCGCCGTTCGTTTGGGGA AGCCATCTTGGTGGCGTGTCTTTCGCACGTTGCTTGACCGGCGTCGTGTG GCCAAGCAGATGAAGGAGCTCCGAGCCAAGGTTGAGGATGTCAGCCAGAG GAATGCGCGCTACCACCTCATCAAGGGATCTGACACCAAGCCTACCACCA GAACTGGTCAGTCCAGCATGATGACTGGTGAAACAATGTCAGGCCTGGAG GAAGCAAGGATGGAGAAGGACCAGGGCAAAGCAAAAGTGGATCTCATTAG GCTAATCAATAGGATGGATGAGAACCTTCAAGTGATTGGTATCTGGGGAC CAAGTTATGTTCTCCAGGAGGCATCCATCATCAAACTAGCCTACGATGAC CTAAAAAGAACGAAGAAGTTTGAATGCCATGCCTTGATTCAGATCATGCA CCCCTTCAATCCAACTGAGTTTTTGAAAACCATCGCCAGGCAATTCTATG TCGATTCTCTTGAAGAAACAGCGAGGATAACACAACAGGACTCTACTCCT GGAGCCCAAGATTTGCGAAGGATGGGGGTGATGACAGAAGGTGATTTGGT TGGTGCATTCAAGAAATATTTGAACAAGAAGAGGTACCTCATAGTGCTTA CTGACCTATCCGATGTTGAGGAGTGGGACCAGATTAAGGCATTGTTTCCC ATCAACAACAAAGGAAGCCGATTCATAGTGTGTGCACAACAAGTTGAAGT TGCTAGCTTATGTGTTGGGCCAGAGATTATACTACTAGATCACAAACAAT TGTCTTCTGACCAGGCACTTTATGCTTTCTACGACAAGGTAATATCCGAA GCCCTGAATCGTCTAACTTAA
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Coding sequence (CDS) from alignment at Sh_008F07:28616..29686-

>Sh_008F07_t000040 ID=Sh_008F07_t000040|Name=Sh_008F07_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=1071bp|location=Sequence derived from alignment at Sh_008F07:28616..29686- (R570 Sugarcane cultivar)
ATGACACCTAAAATCAAGTTTAGAAACCCAGAAATACACTGTTCAAAGTT
CGGGGAGGTGGCCTTGCAGCTCGGCGTCCAGCGCGACCACGCTTTCATTA
GGGATGAGCTCGAGATGATGCTGGCTTTTCTGATGGCCGCGCATGACGAG
CGCGATGAGCACATGGTTGTCAAGACCTGGGTGAAGCAGGTCCGCGATGT
CGCCTATGATGCCGAGGACTCCCTCGAGGACTTCGCCGTTCGTTTGGGGA
AGCCATCTTGGTGGCGTGTCTTTCGCACGTTGCTTGACCGGCGTCGTGTG
GCCAAGCAGATGAAGGAGCTCCGAGCCAAGGTTGAGGATGTCAGCCAGAG
GAATGCGCGCTACCACCTCATCAAGGGATCTGACACCAAGCCTACCACCA
GAACTGGTCAGTCCAGCATGATGACTGGTGAAACAATGTCAGGCCTGGAG
GAAGCAAGGATGGAGAAGGACCAGGGCAAAGCAAAAGTGGATCTCATTAG
GCTAATCAATAGGATGGATGAGAACCTTCAAGTGATTGGTATCTGGGGAC
CAAGTTATGTTCTCCAGGAGGCATCCATCATCAAACTAGCCTACGATGAC
CTAAAAAGAACGAAGAAGTTTGAATGCCATGCCTTGATTCAGATCATGCA
CCCCTTCAATCCAACTGAGTTTTTGAAAACCATCGCCAGGCAATTCTATG
TCGATTCTCTTGAAGAAACAGCGAGGATAACACAACAGGACTCTACTCCT
GGAGCCCAAGATTTGCGAAGGATGGGGGTGATGACAGAAGGTGATTTGGT
TGGTGCATTCAAGAAATATTTGAACAAGAAGAGGTACCTCATAGTGCTTA
CTGACCTATCCGATGTTGAGGAGTGGGACCAGATTAAGGCATTGTTTCCC
ATCAACAACAAAGGAAGCCGATTCATAGTGTGTGCACAACAAGTTGAAGT
TGCTAGCTTATGTGTTGGGCCAGAGATTATACTACTAGATCACAAACAAT
TGTCTTCTGACCAGGCACTTTATGCTTTCTACGACAAGGTAATATCCGAA
GCCCTGAATCGTCTAACTTAA
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