Sh_008F07_t000050

Overview
NameSh_008F07_t000050
Unique NameSh_008F07_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F07contigSh_008F07:54114..54626
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDisease resistance protein RPM1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F07_g000050Sh_008F07_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F07_p000050Sh_008F07_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F07_t000050 ID=Sh_008F07_t000050|Name=Sh_008F07_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=513bp
ATGGACGGAAAGAGGTTGTCTCGTATGGAGACGACATTACCTGCTTTTAA
AGAATCTCAGCTCATCGGGCGAGAGAAAGAAAAGTCAGAAATTATCAAGA
TGATTTCAAATACACATAGCCAAGAATTTGAGGTTATCTCTATCTGTGGA
ATGGGTGGTCTTGGAAAAACTACTTTAGTCAAATATGTCTACCGAAGCCA
AGAGCTCAATGCAATGTTTGAGAAGTGTGCCTGTGTCACAGTCAACCGTC
CTTTCAATCCCAGTGAGCTCATCAATAGCTTAGCTGCACAACTGGGTGGT
GACAAATTGGCTGATCTTCTAGAAGGGAAAAACTATTTGATTGTTCTTGA
TGATATATCATCCACCACAGAATGGGATGCTATAGTAAAATATTTCCCTA
CAACTGTTACAACAAGTAGAATTGTAGTAACCACGAGGGAAGATAATATT
GCTAAGCATTGTTCGAACAACAACAACATAGCCTTTTGTCTCAAGCAAGT
TGGGGTAGGCTAG
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protein sequence of Sh_008F07_p000050

>Sh_008F07_p000050 ID=Sh_008F07_p000050|Name=Sh_008F07_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=171bp
MDGKRLSRMETTLPAFKESQLIGREKEKSEIIKMISNTHSQEFEVISICG
MGGLGKTTLVKYVYRSQELNAMFEKCACVTVNRPFNPSELINSLAAQLGG
DKLADLLEGKNYLIVLDDISSTTEWDAIVKYFPTTVTTSRIVVTTREDNI
AKHCSNNNNIAFCLKQVGVG*
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mRNA from alignment at Sh_008F07:54114..54626-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F07_t000050 ID=Sh_008F07_t000050|Name=Sh_008F07_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=513bp|location=Sequence derived from alignment at Sh_008F07:54114..54626- (R570 Sugarcane cultivar)
ATGGACGGAAAGAGGTTGTCTCGTATGGAGACGACATTACCTGCTTTTAA AGAATCTCAGCTCATCGGGCGAGAGAAAGAAAAGTCAGAAATTATCAAGA TGATTTCAAATACACATAGCCAAGAATTTGAGGTTATCTCTATCTGTGGA ATGGGTGGTCTTGGAAAAACTACTTTAGTCAAATATGTCTACCGAAGCCA AGAGCTCAATGCAATGTTTGAGAAGTGTGCCTGTGTCACAGTCAACCGTC CTTTCAATCCCAGTGAGCTCATCAATAGCTTAGCTGCACAACTGGGTGGT GACAAATTGGCTGATCTTCTAGAAGGGAAAAACTATTTGATTGTTCTTGA TGATATATCATCCACCACAGAATGGGATGCTATAGTAAAATATTTCCCTA CAACTGTTACAACAAGTAGAATTGTAGTAACCACGAGGGAAGATAATATT GCTAAGCATTGTTCGAACAACAACAACATAGCCTTTTGTCTCAAGCAAGT TGGGGTAGGCTAG
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Coding sequence (CDS) from alignment at Sh_008F07:54114..54626-

>Sh_008F07_t000050 ID=Sh_008F07_t000050|Name=Sh_008F07_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=513bp|location=Sequence derived from alignment at Sh_008F07:54114..54626- (R570 Sugarcane cultivar)
ATGGACGGAAAGAGGTTGTCTCGTATGGAGACGACATTACCTGCTTTTAA
AGAATCTCAGCTCATCGGGCGAGAGAAAGAAAAGTCAGAAATTATCAAGA
TGATTTCAAATACACATAGCCAAGAATTTGAGGTTATCTCTATCTGTGGA
ATGGGTGGTCTTGGAAAAACTACTTTAGTCAAATATGTCTACCGAAGCCA
AGAGCTCAATGCAATGTTTGAGAAGTGTGCCTGTGTCACAGTCAACCGTC
CTTTCAATCCCAGTGAGCTCATCAATAGCTTAGCTGCACAACTGGGTGGT
GACAAATTGGCTGATCTTCTAGAAGGGAAAAACTATTTGATTGTTCTTGA
TGATATATCATCCACCACAGAATGGGATGCTATAGTAAAATATTTCCCTA
CAACTGTTACAACAAGTAGAATTGTAGTAACCACGAGGGAAGATAATATT
GCTAAGCATTGTTCGAACAACAACAACATAGCCTTTTGTCTCAAGCAAGT
TGGGGTAGGCTAG
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