Sh_008F07_t000080

Overview
NameSh_008F07_t000080
Unique NameSh_008F07_t000080
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F07contigSh_008F07:72900..74441
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Putative anthocyanin-related membrane protein 1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F07_g000080Sh_008F07_g000080R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F07_p000080Sh_008F07_p000080R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F07_t000080 ID=Sh_008F07_t000080|Name=Sh_008F07_t000080|organism=R570 Sugarcane cultivar|type=mRNA|length=339bp
ATGGACAACTGGTGCTCTCTGGTGCTCCCTTTTGTTGGATTCGCAGTAGC
AATGTTCCTGTTCTACTCCACTGTACCAATAATTTTAAAGATATGTGGCG
CAACCATGCTGAACCTCTCGCTCCTGACTTCAGACATGTGGGCTGTTCTG
ATCCGCATCTTCGCTTATCATGAGAAGGTCGACTGGATCTACTTCGTTGC
TTTCGCTGCCACGGCGGGTGGCATCGTCTTGTACTCATACAAGGGCTCCA
ATGAGGTGGAGACGGCACAGGTCGCCGGGGCCAGCGACGAGCATGGCAAG
GACCGGGACGAGGAGGCTGGAACGCAGAACCCAGTGTGA
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protein sequence of Sh_008F07_p000080

>Sh_008F07_p000080 ID=Sh_008F07_p000080|Name=Sh_008F07_p000080|organism=R570 Sugarcane cultivar|type=polypeptide|length=113bp
MDNWCSLVLPFVGFAVAMFLFYSTVPIILKICGATMLNLSLLTSDMWAVL
IRIFAYHEKVDWIYFVAFAATAGGIVLYSYKGSNEVETAQVAGASDEHGK
DRDEEAGTQNPV*
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mRNA from alignment at Sh_008F07:72900..74441-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F07_t000080 ID=Sh_008F07_t000080|Name=Sh_008F07_t000080|organism=R570 Sugarcane cultivar|type=mRNA|length=1542bp|location=Sequence derived from alignment at Sh_008F07:72900..74441- (R570 Sugarcane cultivar)
GAAAAGAACTTCACTCGATTACATGGACAACTGGTGCTGTAAGTATCTCT CCCCATCCTTCTTGATTGCAAACATTCTGATTTCATTCCTTAAGCTCTGG TCAATGCAAATTCTAGATTATTTTTCCTACTATTATTCATACATGGTTAT GTTTCTCCTTGCCATGGTCTTTTTCTGTTGTTTCAGGTGCTCCCTTTTGT TGGATTCGCAGTAGCAATGTTCCTGTTCTACTCCACTGTACCAATAATTT TAAAGGTACTGCAGGATTGCTGGAGCTTACTATCTTACTGATGATCCTGA CTAATAGTATGTATTTTCAGTTTTTTTCTGACGTTGCATTTGCATTCGCA TTCCCCAACTGACTAACCGTAACTGACGGTGTTTGTTGGGTCTCAACTCT AGCCTACCCCAACTTGCTTGGGACTGACAGGCTTGGTTGTTGTTGTTGTT GTTGTTGCTGCATTTGCATTCGCATTCCCTTGTCTGTTGCAGATATGTGG CGCAACCATGCTGAACCTCTCGCTCCTGACTTCAGACATGTGGGCTGTTC TGATCCGCATCTTCGCTTATCATGAGAAGGTTTGTCCACTGCACTGCATT CCTCTGCATATTCAGAATTCCTAGTTTCCTACTAGGAGAACTAGATACTA GTACCTTGCTAAGAAACATGCTCAAGTTGGAACTGAAGAAGACTCAGCTT GTTCGTTTCCAAGCCATACTAGAACTGACAAAAATGTACTCACCGAGCGT GTGTCTACACATGGCCAGGTCGACTGGATCTACTTCGTTGCTTTCGCTGC CACGGCGGGTGGCATCGTCTTGTACTCATACAAGTATGCCTCGTTTCACC ATCATTTCAGCTATGGCTGCAACCTGGCACGCTTACACATATGGTTTTTA CTACTACTGAGACTAAGAGGACTCTGGTTGCACGCAGGGGCTCCAATGAG GTGGAGACGGCACAGGTCGCCGGGGCCAGCGACGAGCATGGCAAGGACCG GGACGAGGAGGCTGGAACGCAGAACCCAGTGTGAAGCTCTGGTCCCAGCA ATGGCTGCCCCGTCCCCACTCTCCAGCAAGGAGGTGCCATCGGCGCCAGA CGCATCCAGGAGGCTAGTACTAGGTTAGCTGTGATAGTTGTTGCATGGCT TGGAAGGCGAGCGCATATAGCACTAGGCTAATAGGAAGAGCTGGAGAGTT CAGGCTTGGACTGCTTGAGAGCGGCAATATTATCAGAGAATTTGATGAAG TGTAGCAGGACTTACTTGAGATTTGACGGAAATAGTATTATTTATGTAGA AGAAGAACAGTTGATAACACACCAACAGCGAACCGTCAGAAGATTAGGCT GATGCATTGCCAATTCTTCAAACATAACCAATTTGACCTTATATATAGTT CACGAAAGTTAAGGACTCTATAGTTCTAAGTGTCAAGCATAGCCATGATG CAAGAAGGAAGAACATACTAGGTCTTTGTTTACCCACGGCTTTAGTGCTT GCAGATGCATTATCTAATGTAACAAAGAAGATCTCGTCAGTT
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Coding sequence (CDS) from alignment at Sh_008F07:72900..74441-

>Sh_008F07_t000080 ID=Sh_008F07_t000080|Name=Sh_008F07_t000080|organism=R570 Sugarcane cultivar|type=CDS|length=339bp|location=Sequence derived from alignment at Sh_008F07:72900..74441- (R570 Sugarcane cultivar)
ATGGACAACTGGTGCTCTCTGGTGCTCCCTTTTGTTGGATTCGCAGTAGC
AATGTTCCTGTTCTACTCCACTGTACCAATAATTTTAAAGATATGTGGCG
CAACCATGCTGAACCTCTCGCTCCTGACTTCAGACATGTGGGCTGTTCTG
ATCCGCATCTTCGCTTATCATGAGAAGGTCGACTGGATCTACTTCGTTGC
TTTCGCTGCCACGGCGGGTGGCATCGTCTTGTACTCATACAAGGGCTCCA
ATGAGGTGGAGACGGCACAGGTCGCCGGGGCCAGCGACGAGCATGGCAAG
GACCGGGACGAGGAGGCTGGAACGCAGAACCCAGTGTGA
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