Sh_008F07_t000100

Overview
NameSh_008F07_t000100
Unique NameSh_008F07_t000100
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length624
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F07contigSh_008F07:74949..76657
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Putative anthocyanin-related membrane protein 1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F07_g000100Sh_008F07_g000100R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F07_p000100Sh_008F07_p000100R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F07_t000100 ID=Sh_008F07_t000100|Name=Sh_008F07_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=624bp
ATGGCGCCGCCGGACGAGGGTGCTGCAGCAGGCGGCGCGCGGCGGTGGGT
GCGGCGGGAGACGCTGCTGGGCCTCGCGCTGGGGCAGTTCGTCTCGCTGC
TCATCACCGCCACCGGCTTCGCCTCCTCCGAGCTCGCCCGCCGAGGGATC
AACGCGCCGACATCGCAGTCACTCCTGAACTACATCCTCCTCGCTGTGGC
CTACGGCGGCGTTCTCCTCTACCGGCGGCAGCCACTCACGATAAAATGGT
ACTACTACTTAATCCTTGGAATTATCGATGTGGAAGCTAATTATATCGGT
ATGTACTTAACACAAATTAAAGCATTATTTCAGTTTCTGTTGGTCCCATT
AATTTTTTTGTTTGCTTGTGCAGTCGTGAAGTCATACCAGTACACATCTT
TGACAAGCGTGATGCTGTTGGATTGCTGGTCAATCCCGTGCGTCATTGTT
CTTACTTGGGTATTTCTGAAGACAAAGTATGGGTTGAGGAAGTTCCTTGG
CGTCGGAGTTTGTGTGGTTGGCCTTATACTAGTTGTATTTTCAGACGTCC
ATGCCTCTGATCGAGCTAGCAAGAATATGCTTCTCATGGTGTTATATATG
TGCCTATGTTACAGTCGCATATAA
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protein sequence of Sh_008F07_p000100

>Sh_008F07_p000100 ID=Sh_008F07_p000100|Name=Sh_008F07_p000100|organism=R570 Sugarcane cultivar|type=polypeptide|length=208bp
MAPPDEGAAAGGARRWVRRETLLGLALGQFVSLLITATGFASSELARRGI
NAPTSQSLLNYILLAVAYGGVLLYRRQPLTIKWYYYLILGIIDVEANYIG
MYLTQIKALFQFLLVPLIFLFACAVVKSYQYTSLTSVMLLDCWSIPCVIV
LTWVFLKTKYGLRKFLGVGVCVVGLILVVFSDVHASDRASKNMLLMVLYM
CLCYSRI*
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mRNA from alignment at Sh_008F07:74949..76657-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F07_t000100 ID=Sh_008F07_t000100|Name=Sh_008F07_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=1709bp|location=Sequence derived from alignment at Sh_008F07:74949..76657- (R570 Sugarcane cultivar)
CTCAATGGCGCCGCCGGACGAGGGTGCTGCAGCAGGCGGCGCGCGGCGGT GGGTGCGGCGGGAGACGCTGCTGGGCCTCGCGCTGGGGCAGTTCGTCTCG CTGCTCATCACCGCCACCGGCTTCGCCTCCTCCGAGCTCGCCCGCCGAGG TACGTGTGTATACCTCAGTTCTACTTCTACACTGCACTACACACGCCGCG TCGCCTTCCCTGCCTGCACGCCCGCCGGCCGCCGCCAGCCATCGCGCGCG CGCTGGATTGCTTCGCCGCCGCCGCCGCCCGCCGACCGCCGAGACGGCGA GTGCTCGGTACTGTTGCCTGTTGGGAATTATTGAGGGATCGCGCACGCAC GCACGTTCCGTGTGACGAAATGAAATCGATCGAAATCTGCCGGAAAGATT TGCGCTTTTGACTCCTCTGGTGGTGCAGCGACGAAGTAGGGGAATCTGGA TCCTCCGCCGTCGATTCGCGATGCTTTTGCTCCAGCTCGACACGGATTTT TTTTCCCAACAGTATAAAATCTGTAACCTTTTTCGATTATAAACATCGTG CCTCCCTTTCCGCACTAGTTAATTCAGTGGTGCCTGAGCTCTTTGACTAA TCACTTCACTGGGGAAAAGTTGGTTTTTTTGTTCTGTTTCAGTTGGTTTC AGCTCACTTTACACGTTCTGTCTGATTTCTGATCAGTTGACTGACACTGC AACATATTTTCAGGGATCAACGCGCCGACATCGCAGTCACTCCTGAACTA CATCCTCCTCGCTGTGGCCTACGGCGGCGTTCTCCTCTACCGGCGGCAGC CACTCACGGTATGCAATGCATCCTTCAAAGCTCCAACTGTTACGTCAGAG TGAGCTGTCATGTCAGAAAGTCGATACACGGAAAATGTCCAGCGACGTAA AGAACCTGTTGATTCCTGTTCTTGGCCATTTGCGGCTTCTCGAGCGCACG TCCATCCTTTGCCTTATTCCAATCTGACCTCCGGTCCTTTCTACACCGTT GAAGCTTGCTTGTATGTCACATGTGCATTTATATATCTTATCTTTTCGCT TCTCAATAGTTAGGGCCTATGATCACTGCCTGTTATCTTGGTGTAGGACA CGAGCACAGCAGGACTGATGCTTATTCTGATTCTGCTTTTCTCTTAGAGG CTGTAACTAAACTCCTCTTTTGAAAGAAACTGGCACAGCCTTGCAGCCCT TCTTTCGAAAATATTCTGATTCTGTTTTCAAATACAGCTTGGTTAGGCCA ATTTTTTGGTTGGCAGCCGCAATGTTTATAGGTGGCATCATAATGCAGAA TCTGTACCCTTTTCTGTGCAGATAAAATGGTACTACTACTTAATCCTTGG AATTATCGATGTGGAAGCTAATTATATCGGTATGTACTTAACACAAATTA AAGCATTATTTCAGTTTCTGTTGGTCCCATTAATTTTTTTGTTTGCTTGT GCAGTCGTGAAGTCATACCAGTACACATCTTTGACAAGCGTGATGCTGTT GGATTGCTGGTCAATCCCGTGCGTCATTGTTCTTACTTGGGTATTTCTGA AGACAAAGTATGGGTTGAGGAAGTTCCTTGGCGTCGGAGTTTGTGTGGTT GGCCTTATACTAGTTGTATTTTCAGACGTCCATGCCTCTGATCGAGCTAG CAAGAATATGCTTCTCATGGTGTTATATATGTGCCTATGTTACAGTCGCA TATAAAAAC
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Coding sequence (CDS) from alignment at Sh_008F07:74949..76657-

>Sh_008F07_t000100 ID=Sh_008F07_t000100|Name=Sh_008F07_t000100|organism=R570 Sugarcane cultivar|type=CDS|length=624bp|location=Sequence derived from alignment at Sh_008F07:74949..76657- (R570 Sugarcane cultivar)
ATGGCGCCGCCGGACGAGGGTGCTGCAGCAGGCGGCGCGCGGCGGTGGGT
GCGGCGGGAGACGCTGCTGGGCCTCGCGCTGGGGCAGTTCGTCTCGCTGC
TCATCACCGCCACCGGCTTCGCCTCCTCCGAGCTCGCCCGCCGAGGGATC
AACGCGCCGACATCGCAGTCACTCCTGAACTACATCCTCCTCGCTGTGGC
CTACGGCGGCGTTCTCCTCTACCGGCGGCAGCCACTCACGATAAAATGGT
ACTACTACTTAATCCTTGGAATTATCGATGTGGAAGCTAATTATATCGGT
ATGTACTTAACACAAATTAAAGCATTATTTCAGTTTCTGTTGGTCCCATT
AATTTTTTTGTTTGCTTGTGCAGTCGTGAAGTCATACCAGTACACATCTT
TGACAAGCGTGATGCTGTTGGATTGCTGGTCAATCCCGTGCGTCATTGTT
CTTACTTGGGTATTTCTGAAGACAAAGTATGGGTTGAGGAAGTTCCTTGG
CGTCGGAGTTTGTGTGGTTGGCCTTATACTAGTTGTATTTTCAGACGTCC
ATGCCTCTGATCGAGCTAGCAAGAATATGCTTCTCATGGTGTTATATATG
TGCCTATGTTACAGTCGCATATAA
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