Sh_008F19_t000020

Overview
NameSh_008F19_t000020
Unique NameSh_008F19_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length723
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F19contigSh_008F19:14823..17382
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePeroxisomal membrane protein 2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F19_g000020Sh_008F19_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F19_p000020Sh_008F19_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F19_t000020 ID=Sh_008F19_t000020|Name=Sh_008F19_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=723bp
ATGAAGGCCATCGGGAACGGCGGGGAATGGTGGTGGAACCTTCCCTCTCT
CCGCCGCAAGTCCGACTCCCGCCGCCGCGGTCGCCGCAACACTGACCCCC
GCGGCCGCCGCCGCGGTCCCCCGCGGTCGCCGCTCTCGTCGTCCTCCTCC
TCGGAGTCCATCGAGCAGGGCGGCCGCTGGCCCATCGAATTCCCCTTCAG
GCAGGCTGTCACGGCGGCCTCTCTCACCTTCACCGGCGACACCATCGCGC
AAGTCCGCAGCCGCATCGTCGACCGCCGAAGATACTGTCCCGACTCCGAC
ACCAAGGAACTCATACCAGACATATTGCGGAACCATGATTGGATCCGTGC
GCTTCGTATGTCTTCGTATGGATTTCTTCTTTATGGTCCAGGTTCATACG
CATGGTATCAGCTCCTTGATCGGTGCATGCCCAAGCAGACGTTTGTAAAT
TTGTCTGCTAAGGTCATCCTGAACCAGATCGTGCTTGGTCCTTGTGTTAT
TGCTGTAATATTTGCTTGGAACAACTTATGGTTGGGGAAACTTTCCGAAC
TCCCATCCAAATATCAGAATGATGCCCTTCCTACGCTTCTATATGGGTTT
AAGTTTTGGATTCCTGTATCGATTGTCAACTTTGGGGTTATTCCTTTGGC
TGCTCGTGTCGCCTTCATGTCCTCTTGTTCCATTTTTTGGAACTTTTATC
TGTCGACCACAATGAGCAAATGA
back to top

protein sequence of Sh_008F19_p000020

>Sh_008F19_p000020 ID=Sh_008F19_p000020|Name=Sh_008F19_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=241bp
MKAIGNGGEWWWNLPSLRRKSDSRRRGRRNTDPRGRRRGPPRSPLSSSSS
SESIEQGGRWPIEFPFRQAVTAASLTFTGDTIAQVRSRIVDRRRYCPDSD
TKELIPDILRNHDWIRALRMSSYGFLLYGPGSYAWYQLLDRCMPKQTFVN
LSAKVILNQIVLGPCVIAVIFAWNNLWLGKLSELPSKYQNDALPTLLYGF
KFWIPVSIVNFGVIPLAARVAFMSSCSIFWNFYLSTTMSK*
back to top

mRNA from alignment at Sh_008F19:14823..17382+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F19_t000020 ID=Sh_008F19_t000020|Name=Sh_008F19_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2560bp|location=Sequence derived from alignment at Sh_008F19:14823..17382+ (R570 Sugarcane cultivar)
CTGACCCCCGGAGGATTCGGAGCCTTTCGACACTATCGGAGCCTCCCCTC CTCAAGCGCAGCAGCTGCGCGCTCTGCCTCAGGCTTTGATTCGAGCGGTT AGCACTGAGCACCCTCTCACGCCGCCGCCGCCGCCGCGGCGCCAACATGA AGGCCATCGGGAACGGCGGGGAATGGTGGTGGAACCTTCCCTCTCTCCGC CGCAAGTCCGACTCCCGCCGCCGCGGTCGCCGCAACACTGACCCCCGCGG CCGCCGCCGCGGTCCCCCGCGGTCGCCGCTCTCGTCGTCCTCCTCCTCGG AGTCCATCGAGCAGGGCGGCCGCTGGCCCATCGAATTCCCCTTCAGGCAG GCTGTCACGGCGGCCTCTCTCACCTTCACCGGCGACACCATCGCGCAAGT CCGCAGCCGCATCGTCGACCGCCGAAGATACTGTCCCGACTCCGACACCA AGGTCACCCATCCCCTTTGTCATGCACCTTATGCCTTTGAATGCTTAGCC GACTTGGTAGTGTTTTTTAATACTCCACCCGTTCCAAATTATAAGACGTT ATTGCTTTTACTCCTATAATTTGGAATGGAGGGAGTAGAAAGCATGAAAG CAACTTAACTCCATATAGATTTTGGTTTTGTGAATCCATATATATAGCTT TTGGTTTTGTATGACTGTAACTCGAGACCATAGCAGATGCCACCTCAACG CTATTCCACTTCAGTATTTTTTACCTTCAAATGCAGATTAAATTGTAATG CTCAAGTATGTGCATTGTGCAGTGCTCTTGTGATCCAACACTACCAAATC AAAATTTTGGATAGTATATATGGTGCTGGCATTGTAGTATTGGGCATTCT AATGAATGCTTGTGCAGCACATCATATTGTAATTCTGATATCTATCAAGG TGCTCGTTTCAGGAACTCATACCAGACATATTGCGGAACCATGATTGGAT CCGTGCGCTTCGTATGTCTTCGTATGGATTTCTTCTTTATGGTCCAGGTT CATACGCATGGTATCAGCTCCTTGATCGGTGCATGCCCAAGCAGACGTTT GTAAATTTGTCTGCTAAGGTATGCTTTGCTTCTCCATTGTAGCCTAATGC GCTGGGCTATTTAAGTTTTTTAATGCAAAGCATCCTTTTTCTTATAACTA TTTGTCATTTCAGGTCATCCTGAACCAGATCGTGCTTGGTCCTTGTGTTA TTGCTGTAATATTTGCTTGGAACAACTTATGGTTGGGGAAACTTTCCGAA CTCCCATCCAAATATCAGAATGATGCCCTTCCTACGCTTCTATATGGTAA TCCTTCTGCCTGAATGTATTATATCTGAACAACTTTAGCAGAAATAACTG ATACTATTATATGTTTCACTCTGTTATGGATATCACAGGGTTTAAGTTTT GGATTCCTGTATCGATTGTCAACTTTGGGTATGGATACTTGGCTTATCAT TTTTCATATTCATCTCAGATGTTTCTAATCATGGCTATGGTTGAATAAAC TGGGTGCCTTTTTAATCACTGCTTAATCCATTAGAGCAATGCAACTGGTT TTTATGCTAGTATTTTTTTTATGCACATACCAGGGTTATTCCTTTGGCTG CTCGTGTCGCCTTCATGTCCTCTTGTTCCATTTTTTGGAACTTTTATCTG TCGACCACAATGAGCAAATGAAACCTCCAGTTGTCAGGTTGGTATTTGCC CAACTCAATCTTCAACCTATAAACTTCTATTGCCTCGGTTTACATTTTTA ATTAGTGAACAACTTGGCTGATAGTACCTGCACTTGTTGACGTTTGACAC CATGTAAACTAATTTCTTTGGTCACCTGATGTGGATCATTTCATGCACAG TTGCCTACCTATCTGGAACTTTCTGCTGAACAATCTGACATGGTTCCTGA TACTCTGATAGAGGGTGCAAAATGTATGTAATTTTGCTCAGGCTGGTTGG ATTCATTAAACAGAGGAGCATCTGAAGGAGTTGGTTTCAGCAGGCATAAC AACAGTGTTGTAAGGTCTGTCTTTGGACAGTCCATGTGTTGTAGTGACAT GACATTAAACTGTGAGGCCTTACTCAGATGTTGATGAGAGGTCAATGGAG GGTGTGCAGTTTTGTCTAATCATGCATGGAGCATTTGTCTCCAATTTGAC TTCAAAAAATGGGGATGAGTTTGTTATGTGGGATGTGTATTGTAGTAGCA AACTTATTATCAGTTTCCCTGACCAGACCATCTATCATGGAGATCAAAGA CATTTGTATTCCACGCTTGCTTGATTAGAAGTGCATCTGTTTCCACGACG ATCATGATCCACCCCACCCGCAACATGGAGCCCTCCTAATATAAGTATCC CTCGATCAGAGTTATTTGGAGGCCGGAGAGCACCTCTCACTGTTCGTCAC TGTTCATGACGTGATGTTGATGCTGTTCATGACGTGAAATCGACATCACT ACTCACCTTTTTTTTTGCTCAGACAAATTTAAAATGTTTTCTCCACTGTT CATCGCGGGCGCGGCGGCAGCGTGCCCAATCGTGCTAGTCTTTCTAGCCA TGGGAAGAGA
back to top

Coding sequence (CDS) from alignment at Sh_008F19:14823..17382+

>Sh_008F19_t000020 ID=Sh_008F19_t000020|Name=Sh_008F19_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=723bp|location=Sequence derived from alignment at Sh_008F19:14823..17382+ (R570 Sugarcane cultivar)
ATGAAGGCCATCGGGAACGGCGGGGAATGGTGGTGGAACCTTCCCTCTCT
CCGCCGCAAGTCCGACTCCCGCCGCCGCGGTCGCCGCAACACTGACCCCC
GCGGCCGCCGCCGCGGTCCCCCGCGGTCGCCGCTCTCGTCGTCCTCCTCC
TCGGAGTCCATCGAGCAGGGCGGCCGCTGGCCCATCGAATTCCCCTTCAG
GCAGGCTGTCACGGCGGCCTCTCTCACCTTCACCGGCGACACCATCGCGC
AAGTCCGCAGCCGCATCGTCGACCGCCGAAGATACTGTCCCGACTCCGAC
ACCAAGGAACTCATACCAGACATATTGCGGAACCATGATTGGATCCGTGC
GCTTCGTATGTCTTCGTATGGATTTCTTCTTTATGGTCCAGGTTCATACG
CATGGTATCAGCTCCTTGATCGGTGCATGCCCAAGCAGACGTTTGTAAAT
TTGTCTGCTAAGGTCATCCTGAACCAGATCGTGCTTGGTCCTTGTGTTAT
TGCTGTAATATTTGCTTGGAACAACTTATGGTTGGGGAAACTTTCCGAAC
TCCCATCCAAATATCAGAATGATGCCCTTCCTACGCTTCTATATGGGTTT
AAGTTTTGGATTCCTGTATCGATTGTCAACTTTGGGGTTATTCCTTTGGC
TGCTCGTGTCGCCTTCATGTCCTCTTGTTCCATTTTTTGGAACTTTTATC
TGTCGACCACAATGAGCAAATGA
back to top