Sh_008F19_t000040

Overview
NameSh_008F19_t000040
Unique NameSh_008F19_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F19contigSh_008F19:34094..37979
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteUbiquitin domain containing 1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F19_g000040Sh_008F19_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F19_p000040Sh_008F19_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F19_t000040 ID=Sh_008F19_t000040|Name=Sh_008F19_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=342bp
ATGGGATGCGCTGGATCCACTCCAAAGACTGACGATAATGGTAAGAAGTT
GAAAAAACCAAAGCCTTGGAAGCACACCCAAGCGATAACACCGGCACAAC
TCAGACAGATGCGTGATGAATTTTGGGACACTGCTCCTCACTATGGTGGA
CAGAAAGAGATTTGGGACGCACTTAGAGCTGCTGCAGATTCTGATTTAGC
ACTTGCACAAACCATAGTGGATAGCGCTGGCATCATTGTATCAAATTCTG
ACATGACACTTTGCTATGATGAAAGAGGTGCCAAATATGAACTTCCAAAG
TATGTTCTAAGCGAGCCAACAAATTTGATCAGGGACGGTTAA
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protein sequence of Sh_008F19_p000040

>Sh_008F19_p000040 ID=Sh_008F19_p000040|Name=Sh_008F19_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=114bp
MGCAGSTPKTDDNGKKLKKPKPWKHTQAITPAQLRQMRDEFWDTAPHYGG
QKEIWDALRAAADSDLALAQTIVDSAGIIVSNSDMTLCYDERGAKYELPK
YVLSEPTNLIRDG*
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mRNA from alignment at Sh_008F19:34094..37979-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F19_t000040 ID=Sh_008F19_t000040|Name=Sh_008F19_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=3886bp|location=Sequence derived from alignment at Sh_008F19:34094..37979- (R570 Sugarcane cultivar)
CCGAGACCCGCACCGGTTTTTGTTGGCTAGCATCGTGCGCGACCACCTAC CGATGCGTCCGTCCCGTCCACCGCCCCCCACTCCTGCTCCGCCTCCGCTT TTCAGCTCTCCACCGCTCTCGCACGTCGCTCCCCAAGTCATCCCATCCCT ACGCCCGCGGCCGCGCCACCGAGTCCAGAAGCTTCCAGAAGGGGGAGGTG GTCGCCCATGACCGTCTGATCGGCCTTCGCCATGGGATGCGCTGGATCCA CTCCAAAGACTGACGGTCTATCCTCCTGCCTAGTCTACTGTTTCTTCTCC GTTGTTTTCTGTACGGTTCAGATTGGGATCTTGTATTGGATGACCGTTGC ATCTTCTGTAATTCGGTTCTGGAACCGAGTTTAGAGTACAGTGGGTAGCT AGTTTGTTAGCGTCCTTGGTTCTTGTATAAGCTGGGCAATGATTGGTAAC TCGAATTAGCTACGCCTGCTATCGCTGGTTAATTGAGCTCCAGGACCATC ACCAAGGTGGTACCAGGGAAGAGCCGTGTTCGGCTTATCTGTAGCACAGC TTCTTGTGAATCGTGATGCAGTTCACGGCCAGCGGATGGACGGAGAAGAT CTTAGTAACTATTGCCACAAGGCAATTGAAGGGAGGACCTGTTCTCTTTT GGGCAAAAGGTAGATCATACAGTTGTTGGGGAGACAAAGATATGACTGGT TGTCATGAAAGTAACTGGAAGTGACGGTCTATTCTTCATATGACAGATGC ACTTCTGCCGCTCTGCTCATGCCCAGCAGAATTATAAAGATGAGATAGTA GTACAGTGTGAATGACTAGCTGAGATGATGGTTTATTCTTGTTGTTGGGG GGAAGCCATCTCATTGGTTAAGCAAAATTTCTTTCCTTATGGTAGCAAAA TCAACGATACAGTGATATGCAAGATAAATTGAAGTGATAATTTGGTCTAT TTCTTGGAGGAAAACCATTGATTGATTAAGAGGATTTGCTTTGTGTTAGA TAATTATTTTGGTTGCACCTACATTATCCATCAGGCACAGATCCGATAGG AGCAAGATGACGATAGCAGATTGGTTGCCTGTGCAGTAGTTCCCTTTCCT TGTTTGATAAACACTAGTCATGCTGTTGAACCAAGGGACATGACTTCACT CTTTTTATTGATTCTGATCTAATGCATCCTTAGTGTACTAGTTTAGACTA CTTTAGAAGGTTCATCAAGCTGTAACATTTTTGTATGCCTAAAAAAACGC TTTTAAATCTAGAGAGTTAGGTTTAGGTGAAGACAAATTTTTATCTTCTA CCATCATGTGAAGAATTTATGGATTGTAAAACTAGTGCTTTCACATACAT GCTTGTAAACTACCCCCCAAGCAAAAAAAATAGTGATATTTTGGAAAGCA TGTGGTCAATCATTTAATATGCTGATGCCATTTTATTATAAAAAAATGAC TTGGCATGCCATAATGATAATTTTTAAATTTGTCAAAAAAAATTTCATAA TACTATAAGTTATATGTTCTATAAATATACTACAATTGAAACTAATGTTT TAAGAAAATCAGGTACTGTGTGGGCATCCAAATCATCACTTTCTTTTTAC TAGAGGAATTAATAGGTTTGTTTTTAAACAGGTCCATTCAATATTTCGTC ATCATTTTTTAGATAGAGGAAGTATTTCGTCAGCATGCTCAGATCTTTCT TTAGAAAGAGCAAAAATGACATCTATCATATGTCAATTCTTCGAGGTTGA ACGATATTTGGCCTCGTTTTGTGCACAACCCTTGTATGGTTCTTGATAGC ATTAGTTTGGTAGAATGTGGTCTGATGGCATTGCTTATTTACAGTGTAGA CCATTGTGCTGATATACTCACTTATTAATGCTCAACACTTTCTCTTTGTC TCAGATAATGGTAAGAAGTTGAAAAAACCAAAGCCTTGGAAGCACACCCA AGCGATAACACCGGCACAACTCAGACAGATGCGTGATGAATTTTGGGACA CTGCTCCTCACTATGGTGGACAGAAAGGTACATTGTATATTTATTGATGC AGCTTCCGTTTTCTACTGTCGGCATTTATTAGTGAATCTGTGATGCATTT ATACTGCATGTTGGACCACTCTTTTTTCTGGTCCTAAGGGCCTGTTTGGT TTGGGCGTTAAAGTTTAACAAACACTGTAGTACTTTCGTCTTATTTGACA AAAAATTTTAATTTTGGACTAATTAGGCTTAATAGATTTGTCTCGTAAAT TACTCCTAATCTGTGCCGACATGCATGCAATTAGTCTACATTTAGTACTC CATGCATTTGCCGCAACATTGATGTGACGGGAGTTAAACTTTAACATGTG CAAACCAAACAGGGCCTAAGATGATGGGCGAGTCTGATTCGACTGAGCTT TGCTAATTGCTAAATAAATGTGTGCAGCACAATACTCTGAATTCACGTCA AAATAATGTTGATTTTGCTGTCTTGGGAATTCACCCCTCTAGTTGGTATT AAATTTGACATATCAACTGTTGTCTTAAAAGGAAAAGAAATATATATAGA GAGGTACCATAAGTTCATAGCTGACATGTAACGAGAGTAGAAATTGACAT CTGCTATGCCACCCAGGGAACGAACAGCTTTCAATGGTTTTGAATGACCA CCATGCAAATTTGTCACTTCTCAACTAGCGCTGTTTTGTAATTTTACTTA TTATGCGGAAAAGGTTTAAAACATGTAGATGCTTTGCAACTGTCATGAAT TTACTGAAGTGTATGGTCTTGTTTACATAAATATTTATGTTCTGCTGATG ACACAGCACTGAACACGCTAGATACAATCATTTTTTTTTACGGAACGAGG CTCCTTCCCATTTCTGTTACCGTTATAACGGAAAATTAAATACATTGCTG TGATTTTTTTACACTAAAATTAACTTTATATTTCTTCCAGAGATTTGGGA CGCACTTAGAGCTGCTGCAGATTCTGATTTAGCACTTGCACAAACCATAG TGGATAGCGCTGGCATCATTGTATCAAATTCTGACATGACACTTTGCTAT GATGAAAGAGGTATTGCGTATACATATCATGGTTTGGTGTAATCTGGTGA ATTTTCAAATTATTAATCACCTTGTACGCTATATTGCAGGTGCCAAATAT GAACTTCCAAAGTATGTTCTAAGCGAGCCAACAAATTTGATCAGGGACGG TTAAATTCATAAAATAAAAGTGGGTCCAATGTAAATTATGTAAATCGCAT TTATTCACTGACATCAACCTTGATCTGATTGGAACTTCAATAATATTATA TGATGTGGCAGATTCTGATTTCAGCTGTTCTCCTACTTGTCCCCTGTCCT GGATTGTAGCGCTGTTAACTCTCATACGGTCATACCTTAGACTTAGAGAA GCAATAACCGCAAACCTCAGCATATAACACCTACTGCTTGTCTCAGCTAG TCAACTGGGTCTGAAGGACACTTGAAGGTTTCGTGGGTTTGCCTATTATC AATCACGTTCACTGAACCTTTTTTCAGAACAAATCTTCTTTGCTTTGGCC TTCAAGTGGTGTACGTCCTACCTGTTCTCAGCATTTCTGCACCAGGGCCT TTTGCCAAAGCCGCAGTGGCTGGCATTGCGGCATCCATCACATGTGGCAT TTTGTCATGTAGGGGAAAACCTACACCAGGAGACACCGAGCCAGAGATGT GCGCCGGGCAGCAGAACGTGCGGGCGCACGCATGGACGCAGGACGCGCGG GGATCGCGGGCACGGCGCATGCAAGCGAGGATGAAGCGATCAGCGAAAGT GGCTGAAGTGGGAAAGCTATCTTTAGTTGTTAAGATATTATTTGCTACCT TTAATTAGTTCCTTGAATTGAGGAGTTTGTTTCCTC
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Coding sequence (CDS) from alignment at Sh_008F19:34094..37979-

>Sh_008F19_t000040 ID=Sh_008F19_t000040|Name=Sh_008F19_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=342bp|location=Sequence derived from alignment at Sh_008F19:34094..37979- (R570 Sugarcane cultivar)
ATGGGATGCGCTGGATCCACTCCAAAGACTGACGATAATGGTAAGAAGTT
GAAAAAACCAAAGCCTTGGAAGCACACCCAAGCGATAACACCGGCACAAC
TCAGACAGATGCGTGATGAATTTTGGGACACTGCTCCTCACTATGGTGGA
CAGAAAGAGATTTGGGACGCACTTAGAGCTGCTGCAGATTCTGATTTAGC
ACTTGCACAAACCATAGTGGATAGCGCTGGCATCATTGTATCAAATTCTG
ACATGACACTTTGCTATGATGAAAGAGGTGCCAAATATGAACTTCCAAAG
TATGTTCTAAGCGAGCCAACAAATTTGATCAGGGACGGTTAA
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