Sh_008F19_t000050

Overview
NameSh_008F19_t000050
Unique NameSh_008F19_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length798
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008F19contigSh_008F19:74100..77443
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePathogen-related protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008F19_g000050Sh_008F19_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008F19_p000050Sh_008F19_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008F19_t000050 ID=Sh_008F19_t000050|Name=Sh_008F19_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=798bp
ATGGAGGCGACGGCGGCGGACTCCTCCGGCGGCGACCGCTACCGGTCCCA
CCTGGCTGGCGAGGGCGAGAAGCACACCGTGTGGCGGCACGGCGCGCCGC
CCTCGTACGACGCCGTGAACGCCCTCTTCGAGGCCGAGCGCACGCAGGAG
TGGCCGGCGGGCTCGCTGGAGGAGGTGGTGCAGAACGCGATCAAGACGTG
GGAGATGGAGCTGTCGCACAAGGCGCGGCTGTCGGACTTCAAGTCCGTGA
GCCCGGGCAAGTTCCGCCTGTCCGTGAACGGCGGGCGTCCCCGGACTGGG
GAGGAGACGCTGGCCATGGGCAGCTACAACGCGCTGCTGGACGGCCCGCT
CCTGCCGAGCGCCGGCGCGTACGACGCCTCCGCCGAGACGTTCCAGTCCT
CGCACGACCTGTTCCGCGCCGCGTTCCCGCGCGGCTTCGCGTGGGAGGTG
CTCAGGGTCTACTCCGGCCCGCCGGTCATCGCCTTCAAGTTCCGGCACTG
GGGCCACAAGGAGGGACCCTACAAGGGCCACGCCGCCACCGGCGACAAGG
TCGAGTTCCACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCG
GAGGACGTGGAGGTGTACTACGACCCGGGCGAGCTTTTGGGAGGCCTTCT
CAAGGGCCCCAAGGTGGCTTCCTCCGAGGAGGACAGCGGCGAGGTGGCGC
TCGCCGAGAGGCTCAGCAAGGCCGCTGCCGTGTCGGAGTCAGGTGCTGTC
CCGCCGCCGCAAGCTTGCCCCTTTCTCAACCCCGGGAAGCCAGAGTGA
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protein sequence of Sh_008F19_p000050

>Sh_008F19_p000050 ID=Sh_008F19_p000050|Name=Sh_008F19_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=266bp
MEATAADSSGGDRYRSHLAGEGEKHTVWRHGAPPSYDAVNALFEAERTQE
WPAGSLEEVVQNAIKTWEMELSHKARLSDFKSVSPGKFRLSVNGGRPRTG
EETLAMGSYNALLDGPLLPSAGAYDASAETFQSSHDLFRAAFPRGFAWEV
LRVYSGPPVIAFKFRHWGHKEGPYKGHAATGDKVEFHGVAVLKVDEQLRA
EDVEVYYDPGELLGGLLKGPKVASSEEDSGEVALAERLSKAAAVSESGAV
PPPQACPFLNPGKPE*
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mRNA from alignment at Sh_008F19:74100..77443-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008F19_t000050 ID=Sh_008F19_t000050|Name=Sh_008F19_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=3344bp|location=Sequence derived from alignment at Sh_008F19:74100..77443- (R570 Sugarcane cultivar)
ATGGAGGCGACGGCGGCGGACTCCTCCGGCGGCGACCGCTACCGGTCCCA CCTGGCTGGCGAGGGCGAGAAGCACACCGTGTGGCGGCACGGCGCGCCGC CCTCGTACGACGCCGTGAACGCCCTCTTCGAGGCCGAGCGCACGCAGGTT CGACGACGCGTTGGTTTCGATCTTCTTCACACATGCACAGATAGCATCTT GGTTGCTGACGACGGCGTGGCGTGCAGGAGTGGCCGGCGGGCTCGCTGGA GGAGGTGGTGCAGAACGCGATCAAGACGTGGGAGATGGAGCTGTCGCACA AGGCGCGGCTGTCGGACTTCAAGTCCGTGAGCCCGGGCAAGTTCCGCCTG TCCGTGAACGGCGGGCGTCCCCGGACTGGGGAGGAGACGCTGGCCATGGG CAGCTACAACGCGCTGCTGGACGGCCCGCTCCTGCCGAGCGCCGGCGCGT ACGACGCCTCCGCCGAGACGTTCCAGTCCTCGCACGACCTGTTCCGCGCC GCGTTCCCGCGCGGCTTCGCGTGGGAGGTGCTCAGGGTCTACTCCGGCCC GCCGGTCATCGCCTTCAAGTTCCGGCACTGGGGCCACAAGGAGGGACCCT ACAAGGGCCACGCCGCCACCGGCGACAAGGTCGAGTTCCACGGCGTCGCC GTCCTCAAGGTTATATTACTTCCTTTGCCCCGCGCTCAGTTAATGCCCCG CGCTGAGTACAGCCTGTTTGCTTACTGTTCACTAATTTATTACGAGAGAA AAACACCGTTGAATAGCTGACTGATTTAACTGATAAACTCAAGCGAACGT AGCAAGAGCAAGATGCTTGTACGTAGACGTAGCCATCGACAGTCCGGTTC ACGTGTTGGTAAAAAAAATCGGCGCACTATTTCTTGACAGTAGTTTAGTG TATGAATAATTGACCATTTTGTCATGTTCACCGAGATACGATTTACTAGT AATAAAAGGGATACGATAGTTGTGTAGTGCAGCAAGATACATCTGATCCT TATCTCTTCTTTATTAGCACTAAAAAAAAGGTCAGTGCTGGTCCTGAGAT TTTTGGGGCCCAGAGCAAAACTGAATCTAGGGCCCCTTAATATAAGCACC ATAATAATATTGTTATAAACACATGTATAACAGAACATTACCAATAAACG TTTAAAGAGTATCAAAAGAAATATCATATCAAATGAATAATACATATTAA ATTGCCTCAAAATTCCTTTTAATATTTTTGGACGCAAAATTTTAAAGTAT CACCAACTCATCCAAAACTCATCCAAATTCCATGAAGTGCTTGTACGAAT TAAATTTACTAATAAATGGAAGATAAAAGGGCGTCTGGCGCTATATAGAA GCTGAATGATCTAGCGTCACGACCTCAGCCTCACGCACAAGCACTAATGC GGAGTTGCATGTTGATTCCCTTAGTTTTTGGGCCAGGCCTAAACGGGCTC CTACTTTTCTAGTACTACTAGTAGCTAGCCACTTAATATACAGTACGTAG ATATATATACACACACTGCTACAACGTACATCATACATACTATTGGGGAG GCCCCTAGGTTTGGAGGGCCTAGAGCGGCTGCCCCTCTCGCCCCCCTCCA GGGCGATTTTTTTTTATTTTTAGCCTAAATTTAAAACATATTTTAAATTT GACCCGGGTTTGAAAGTTTTTTTAAAACTAGCCCGTTTGGCCCCGCCACC ATGCATGGCGGGGCAATTGCACTGAACCCCGCCATGCATGGTGACGGGAT GCAGGGGCACGTGGCACCCTGCAGGCCAGCGTGGAAAGGTGTACCCCGCC ATGCATGGTGGCGGGGTACCCCTAACCCGCCACCGATCATGGCGGGGTAC AACCATCTGAAACATGTCCACTTCCCTGTCACCTTTACATCAACTTTCTT CCTTTACGTCATGTCTTAGCTGTAGCACCATAATCCTATACTTCACAGAG CTACTTATAGGCTGGAGCTCTACTCTCTCCCATACTTATAGGCTGTAGCA CCATAATCCTATACTTATAGGCTGTAGCACCATAATCTTATACTTATAGG CTGTAGCACCATAATCCTATACTTATAGGCTGTAGCATCATAATCCTATA CTTATAGGCTGTAGCACCATAATCCTAGGCCTCGTTTAGTTCGGTGAATT GGGGAGAAAAACACCGTATCAGAATTCCTGTAGCATTTCGTTTGTATTTG GTAAAAATTATCCAAATTTTGACTAACTAGGATTAAAATGATCATCTCGC AAAGTACAACAAAACTATGCAATTAGTTTTTGATTTCATCAACATTTAGT ACTCCATGCATTTGCCGACATTTTGATATGACAGGGAATCTTCTTTTTGT ATAGTGAAATTTGGGGGAGAATTGGGAAAACTAAACAAGAGCCTATACTT ATAGGCTGTAGCACCATAATCCTTTACGTCATGTCTTTGCGACGTGCTCT GCACCACTTCAGACTCTCCCGCATACCTCAACTGCTCTGCACCATTAGTC TACATTTAGTACTCCATGTATTTGATGAAACATTGATGTGATAAGAGTTA AACTTTAACTCCTCCAAACCAAACGGGCCTGAATGTGATAATAGCCTACT AACAAACAGAGTATTTCTGTGAACTGACTCGGGTGCTAATTCTTGATTAT TTTTCTACAATCTACGCTGATGTATTACAACTACTTATTTCTAGACTTAC AGAGACCACTAATGCTTGTAGTTCTACTGGGTGCACCGTGGCGCCTGGGG CAGTACGCAACCGTGGCATCATGGCGGGTTGTACCCCGCCATGATCGGTG GCGGGTTAGGGGTATCCCGCCACCATGCATGGCGGGGTACACCTTTCCAC GCTGGCCTGCAGGGTGCCACGTGGTCCCTGCACCCCGCCACCATGCATGG CGGGGTTCAGTGCAATTGCCCCGCCATGCATGGTGGCGGGGCCAAACGGG CTAGTTTTAAAAAAACTTTCAAACCCGGGTCAAATTTAAAATATGTTTCA AATTTAGGCTAAAAATAAAAAAAAAATCTCCAGGGCCGGGCCTGAAAAAG GTAATAGTGACGACTTTGTGATATGTAGATGACGCTATCAGTCGCCTTTC TGTCACTGACTCATTGTGTGAGTAGGTGGATGAGCAGCTGCGGGCGGAGG ACGTGGAGGTGTACTACGACCCGGGCGAGCTTTTGGGAGGCCTTCTCAAG GGCCCCAAGGTGGCTTCCTCCGAGGAGGACAGCGGCGAGGTGGCGCTCGC CGAGAGGCTCAGCAAGGCCGCTGCCGTGTCGGAGTCAGGTGCTGTCCCGC CGCCGCAAGCTTGCCCCTTTCTCAACCCCGGGAAGCCAGAGTGA
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Coding sequence (CDS) from alignment at Sh_008F19:74100..77443-

>Sh_008F19_t000050 ID=Sh_008F19_t000050|Name=Sh_008F19_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=798bp|location=Sequence derived from alignment at Sh_008F19:74100..77443- (R570 Sugarcane cultivar)
ATGGAGGCGACGGCGGCGGACTCCTCCGGCGGCGACCGCTACCGGTCCCA
CCTGGCTGGCGAGGGCGAGAAGCACACCGTGTGGCGGCACGGCGCGCCGC
CCTCGTACGACGCCGTGAACGCCCTCTTCGAGGCCGAGCGCACGCAGGAG
TGGCCGGCGGGCTCGCTGGAGGAGGTGGTGCAGAACGCGATCAAGACGTG
GGAGATGGAGCTGTCGCACAAGGCGCGGCTGTCGGACTTCAAGTCCGTGA
GCCCGGGCAAGTTCCGCCTGTCCGTGAACGGCGGGCGTCCCCGGACTGGG
GAGGAGACGCTGGCCATGGGCAGCTACAACGCGCTGCTGGACGGCCCGCT
CCTGCCGAGCGCCGGCGCGTACGACGCCTCCGCCGAGACGTTCCAGTCCT
CGCACGACCTGTTCCGCGCCGCGTTCCCGCGCGGCTTCGCGTGGGAGGTG
CTCAGGGTCTACTCCGGCCCGCCGGTCATCGCCTTCAAGTTCCGGCACTG
GGGCCACAAGGAGGGACCCTACAAGGGCCACGCCGCCACCGGCGACAAGG
TCGAGTTCCACGGCGTCGCCGTCCTCAAGGTGGATGAGCAGCTGCGGGCG
GAGGACGTGGAGGTGTACTACGACCCGGGCGAGCTTTTGGGAGGCCTTCT
CAAGGGCCCCAAGGTGGCTTCCTCCGAGGAGGACAGCGGCGAGGTGGCGC
TCGCCGAGAGGCTCAGCAAGGCCGCTGCCGTGTCGGAGTCAGGTGCTGTC
CCGCCGCCGCAAGCTTGCCCCTTTCTCAACCCCGGGAAGCCAGAGTGA
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