Sh_008G08_t000040

Overview
NameSh_008G08_t000040
Unique NameSh_008G08_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1035
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008G08contigSh_008G08:44816..48192
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Os05g0589000 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008G08_g000040Sh_008G08_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008G08_p000040Sh_008G08_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008G08_t000040 ID=Sh_008G08_t000040|Name=Sh_008G08_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1035bp
ATGGCGGGGTCCGCGGCCGACGCGGAGCAGGAGCAGAAGCGGGCGGCGGC
GGCGGCGTACGACTACGAGGGCGACGCGCGCTGGGCCGACTACTGGTCCA
ACGTCCTCGTCCCGCCGAACCTCGACGTCGTCGACCACTTCAAGCGCAAG
TTCTACCAGCGCTACATCGACCATGATCTGGTCGTTGAGCCAAGGTCATT
CACCGGTTCCACTCAGCCCAGCAGGCCAGATGTAAGGTCTTCGTCTTCGT
CATCCAGCGAGAATGTCAGGGCACGTAATTCAGGATCTACTTCGAGGTCA
GCTCCGCCGCCGCCGCCACCACCAACACAAACAGACGGTGCTGCCAACCC
TTTACGGCTCGATGCACGGAGTATACATTTCTCCCTCAACGCATGGATAC
TTGTGGTTGCTGGTCTGGGAATGCTTCCTATTTTGCCAAAACACCTTGCT
GACAGAGCTTGCAAACTTTCACTACTGGGAACAATATTTTCATCAGGATA
TTCTCTATACAGTACTTATGGGAAACCAAGAGCATGGAACATGCCAGCAA
TTCAAGCTTGGTTGCAGTCTGTACTTGCAACCAAGGATTTTATCCATTTA
ATGTTCTCTCTTATGCTCTTCACATCTCAATTGCACTTGAAGATTGCTGC
ACTACCTGTGCTTTGCTGGGCACTTGATCATGTTGCCAGATTCCTAAGGC
GTAACTTTGCTCGATCCTCTTTCTATAGGCAATACCTGGAAGAGCCTTGT
CTTTGGGTAGAGACAAATAATACTACACTGAGCCTCCTTAGTTCAAATGC
TGAAATTGCCTTGGGTTTTCTTCTGATCATATCACTGCTCTCGTGGCGCC
GTAGCATAATTCAGACATTCATGTACTGGCAGGTATTGAAGCTGATGTAC
CATGCTCCTGTGACATCCAGCTATCACCAGAGCGCCTGGGCGAAAATTGG
CAGGATTGTGAATCCATACATCCACCGCTACGCCCCGTTCCTCCAGACGC
CCATTTCTGCAATCCAAAGATGGTGGTTCAGGTAG
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protein sequence of Sh_008G08_p000040

>Sh_008G08_p000040 ID=Sh_008G08_p000040|Name=Sh_008G08_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=345bp
MAGSAADAEQEQKRAAAAAYDYEGDARWADYWSNVLVPPNLDVVDHFKRK
FYQRYIDHDLVVEPRSFTGSTQPSRPDVRSSSSSSSENVRARNSGSTSRS
APPPPPPPTQTDGAANPLRLDARSIHFSLNAWILVVAGLGMLPILPKHLA
DRACKLSLLGTIFSSGYSLYSTYGKPRAWNMPAIQAWLQSVLATKDFIHL
MFSLMLFTSQLHLKIAALPVLCWALDHVARFLRRNFARSSFYRQYLEEPC
LWVETNNTTLSLLSSNAEIALGFLLIISLLSWRRSIIQTFMYWQVLKLMY
HAPVTSSYHQSAWAKIGRIVNPYIHRYAPFLQTPISAIQRWWFR*
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mRNA from alignment at Sh_008G08:44816..48192+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008G08_t000040 ID=Sh_008G08_t000040|Name=Sh_008G08_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=3377bp|location=Sequence derived from alignment at Sh_008G08:44816..48192+ (R570 Sugarcane cultivar)
ATGGCGGGGTCCGCGGCCGACGCGGAGCAGGAGCAGAAGCGGGCGGCGGC GGCGGCGTACGACTACGAGGGCGACGCGCGCTGGGCCGACTACTGGTCCA ACGTCCTCGTCCCGCCGAACCTCGACGTCGTCGACCACTTCAAGCGCAAG TTCTACCAGCGCTACATCGTGAGTTCCGCTTCCACCGTCGCCGCCGCCTT GGAGTTCCGTGATGCCCTCCCTCTTCCCGCCGCCGCCGTTGTTCCCCGAC CCGTCCGCCTGCGCTGGACAGTAGTGCTAATTTAGGATCTGACGCGCTTT CCGTACGGAATAGCGTTGCTGCTAAATTCGTGTGCTGGGGTTTGCTTAAG CTTGTCGTGTTGAGGTCCAGATTGCAGGAGCGTGCCTTGTAGCGTCGCGT CGCGTCGGGTCATATGCTGGACTCCTGGTTGCAGTCAGTGGCTGAACAGA GATCCAGTCGCGGCGCGCTGCTTGCTTCGCTGGTGACGGTCTGCTTGCTT ACTGTAGAATGTACTTGAACACGGCATGTTCGATCCATTCCATTACCATG TGCTGCTTGCTTCCAACCCTGGGTGTTTGTGCTACTCCTTCAAGCTTGTG ATTTCATTATGGGGATTGCAACATGCTCGTTCTTTAGTAAGTTTATCCAT ACAACCCATCTATAAGGGCTTGGCTGCACTCTTATCCACCTCAATCCACA TGTGTTGGGGTGGAAACTAAACCAACTTACACTCCAATCCACCTCAACAC ATATGGATTGAGGTGGATACAAGTGCATCCAAACAAGCCCTAAGTTGGGT CAGGAACTCAGGATACTGTTATGCAGCTGTGCAGGCAGGGCTATAGAACA AGTTTATTCTTATGCAGACTTAAGAAAATGGAAGACAAATTCTCGCCATT TGCTTTTGCACACCATTTTGAGTTAATATCATTGCTTGTGTGCCACTGAA CACTGAAGAGTGAATCAATACGGTAGTTCATGCATTTTGATTTTCCCTCC TTTGGTTTCATAGGACCATGATCTGGTCGTTGAGCCAAGGTCATTCACCG GTTCCACTCAGCCCAGCAGGCCAGATGTAAGGTCTTCGTCTTCGTCATCC AGCGAGAATGTCAGGGCACGTAATTCAGGTAAAACATATATGTTTTGGAC ATCCATCAATTTCTGTATCACATGTATCGTAAGCTGAATTGATTTCTTGT GCAGGATCTACTTCGAGGTCAGCTCCGCCGCCGCCGCCACCACCAACACA AACAGACGGTGCTGCCAACCCTTTACGGCTCGATGCACGGAGTATACATT TCTCCCTCAACGCATGGGTAAGGGATAAGCCACTCTTTTCTTTGGTTTAT TGAATTGTTAATTGCATGTGTCTAAAATGCTAGCTGGTTCTTCAAGTTCC ATTGTTCTGCTTGTTTCTATGGCAATCCTTGTGGGCATGCCATTGGGAAA CTCTCTTTGTTCTTGACCGCGGACTCATCAGCCTGTCATGTTACTGTTCT GAACCTTGCTTGTGGTTTTTTGATTCATTACTTGTGGGCATGACCGAAAT ATTATGTTTCAGATACTTGTGGTTGCTGGTCTGGGAATGCTTCCTATTTT GCCAAAACACCTTGCTGACAGAGCTTGCAAACTTTCACTACTGGGAACAA TATTTTCATCAGGATATTCTCTATACAGTACTTATGGGGTAAGTACCTGC CTATCTGAAGAATGAGTAATTCATTTAAAGTTTACCAGATCTTTTTGCAT GATGTGACTTTGATTAAATTTTCTTTTGTGTACAGAAACCAAGAGCATGG AACATGCCAGCAATTCAAGCTTGGTTGCAGTCTGTACTTGCAACCAAGGA TTTTATCCATTTAATGTTCTCTCTTATGCTCTTCACATCTCAATTGCACT TGAAGAGTAAGATGCACCTTGTTTCGTGCAAATTCATGTCTCTGATGTCT GCTTTTGGATATGCTTGCCTCATCATAATTTTATATTTCTCACAGTTGCT GCACTACCTGTGCTTTGCTGGGCACTTGATCATGTTGCCAGATTCCTAAG GCGTAACTTTGCTCGATCCTCTTTCTATAGGTAGCTGTATGTGGATTCGT TTCTGTATCCTTGGCACAATAGGTATCCAGTTCCCATTTCTCAATACTGT GTCGATGTCTTTTTCAGGCAATACCTGGAAGAGCCTTGTCTTTGGGTAGA GACAAATAATACTACACTGAGCCTCCTTAGTTCAAATGCTGAAATTGCCT TGGGTTTTCTTCTGATCATATCACTGCTCTCGTATGTATATTCAGAGTTC CATACTATTCTGAAGTTTTAATTTTATCTTAGGAACTACAGTACATCTTT GACCTTTACCCTTTTGTGTTGCAGGTGGCGCCGTAGCATAATTCAGACAT TCATGTACTGGCAGGTGAGTGATCCCCCAAAAGTTCAGGCTTCCCTTTTT GTATTTCATCTCTTACTTGCATGCTGTTTTGCTGCATGTAATTCCTAACC TCTGTATCTTTGGCCAAATGTACTGATTTACCTTGTTTGTGTTATTGTTT CAATTCCAAGAGATCCAATTTATCTTCTGCCTTGCTTTTTGTCCACCAAC AACCAGCTAGAATTTGGTCGACAATAGCAACTAGGTTATTATTAGTTATA GCTATCGCCTGTTAGGTGTATTACTGCTCTTTCCAAAGTAACTTGTATTA ACCGTCAGCACACACGACAGGAGCGCTTGGAGATTGGCAATCAACGTGCC TGAACTGTGACCTCTTTTTGTCTTGTGCCTTTTATGTCCCTTTATGTGTC TCCCTGTTTCTCGTCTCTTTTGGGTTTCATCTCTAGCCTACCTCAACTTG CTTGGGACAAAAGGCTATGTTGTTGTTGTTGTTGTTGTTGTGACACACGC TGCATTGCTTACCAGGGCCCTTCACATGCTTGTTTATCGTGCAGGTATTG AAGCTGATGTACCATGCTCCTGTGACATCCAGCTATCACCAGAGCGCCTG GGCGAAAATTGGCAGGATTGTGAATCCATACATCCACCGCTACGCCCCGT TCCTCCAGACGCCCATTTCTGCAATCCAAAGATGGTGGTTCAGGTAGAGA GACAGGCGGGTAAAATGAAAATCATGTATCTGCTGCTGAATCACTGAACC GCCTGGTTGGTTTAAGATGGCTACACAGAACATAGCACAGCCGCCGCGTT CTTATGTAATGCTGCAGCAGTGCACTGTATAATATAACCTTTTGCGGGAT GACTGATAATCCCTGAATTCTGGAGGGCCTTATCGTAACAAGAAGGTTGC TGTGTGCCTGTAAACTGATGATGCAGAACAATGCTGAATTGCAATCCGTG GGCTAACGTAACTATGTTCCATGCTTT
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Coding sequence (CDS) from alignment at Sh_008G08:44816..48192+

>Sh_008G08_t000040 ID=Sh_008G08_t000040|Name=Sh_008G08_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=1035bp|location=Sequence derived from alignment at Sh_008G08:44816..48192+ (R570 Sugarcane cultivar)
ATGGCGGGGTCCGCGGCCGACGCGGAGCAGGAGCAGAAGCGGGCGGCGGC
GGCGGCGTACGACTACGAGGGCGACGCGCGCTGGGCCGACTACTGGTCCA
ACGTCCTCGTCCCGCCGAACCTCGACGTCGTCGACCACTTCAAGCGCAAG
TTCTACCAGCGCTACATCGACCATGATCTGGTCGTTGAGCCAAGGTCATT
CACCGGTTCCACTCAGCCCAGCAGGCCAGATGTAAGGTCTTCGTCTTCGT
CATCCAGCGAGAATGTCAGGGCACGTAATTCAGGATCTACTTCGAGGTCA
GCTCCGCCGCCGCCGCCACCACCAACACAAACAGACGGTGCTGCCAACCC
TTTACGGCTCGATGCACGGAGTATACATTTCTCCCTCAACGCATGGATAC
TTGTGGTTGCTGGTCTGGGAATGCTTCCTATTTTGCCAAAACACCTTGCT
GACAGAGCTTGCAAACTTTCACTACTGGGAACAATATTTTCATCAGGATA
TTCTCTATACAGTACTTATGGGAAACCAAGAGCATGGAACATGCCAGCAA
TTCAAGCTTGGTTGCAGTCTGTACTTGCAACCAAGGATTTTATCCATTTA
ATGTTCTCTCTTATGCTCTTCACATCTCAATTGCACTTGAAGATTGCTGC
ACTACCTGTGCTTTGCTGGGCACTTGATCATGTTGCCAGATTCCTAAGGC
GTAACTTTGCTCGATCCTCTTTCTATAGGCAATACCTGGAAGAGCCTTGT
CTTTGGGTAGAGACAAATAATACTACACTGAGCCTCCTTAGTTCAAATGC
TGAAATTGCCTTGGGTTTTCTTCTGATCATATCACTGCTCTCGTGGCGCC
GTAGCATAATTCAGACATTCATGTACTGGCAGGTATTGAAGCTGATGTAC
CATGCTCCTGTGACATCCAGCTATCACCAGAGCGCCTGGGCGAAAATTGG
CAGGATTGTGAATCCATACATCCACCGCTACGCCCCGTTCCTCCAGACGC
CCATTTCTGCAATCCAAAGATGGTGGTTCAGGTAG
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