Sh_008G08_t000050

Overview
NameSh_008G08_t000050
Unique NameSh_008G08_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1764
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_008G08contigSh_008G08:55693..58342
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteRNA polymerase sigma factor
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_008G08_g000050Sh_008G08_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_008G08_p000050Sh_008G08_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_008G08_t000050 ID=Sh_008G08_t000050|Name=Sh_008G08_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1764bp
ATGGGGTTTCAGTTGATCCATGGCAGGCCATGCGCCTATTGCTGCCCGTC
GTCCTCGTCCTCCTCCTCCTCGTGGATGATGCAGGCCCTGCCCCCGAAAC
AGTCTCACCATCCATTGAATGGAAGGAAGCCAATTTTCTCTGAATCCCTT
GCAGCACTGGCGGCCATGCATCTCCTGCTAAAACGTCGCAGAGACCGTAG
CAGCAGGGACATTGCGTCTTCAGCCGGCGTGCTCCAAATCACAGAGAACA
AATCAGCTGCGGCCAACTTAACAAAACACAAGCAGGTGAGTGCAGAAAGG
AAGCTCCTTGATGACGCTCTTGACAGAACTACTGTACAGTATGAGAGCTG
GATGGATGAAGAGACATCATTCTGGATGGAAAGGGATCACACGAACAGCA
CTTTGCAGTACGGTTTGTTAATGCAGAACCTTCAGGAGTTGGAGACGAGT
TTGGCTGGTAAAGACTTGAAGATGCTGGAGAACGACATCCTTGCACACAT
TCAGCAGCTTGGAGCTCTGAGATCGTTCAACGCGTCTATGACCCTGGGTG
CTAACCTACTAGACACCTTAACACATGTCTCATCGCCATATGATCAATCA
GACAGCTCTCTGCTTGACCACCTAATCATCAAGTTTGATCCGGAGACTCC
TCTGGATGAGGAGCAAGAAGATAGCGAAGTAGTAGTCGTCCGGAGTGGCA
AGAGTCAGGAGAGGAAGCTCAAGAGAACGAGAGCGTCAGAGAAAGGATCC
AGGAAGTCGGTGAAGGTGAATCCACGAACACCCAAGAAATCCCGGAAGGC
GAGTAGCAGCCAGTTTATATCCGAGTGGAAAAGTCACCCAGGACGAAGGA
GGATCATTGTGCGTGAGCAATCAGCACTGCTAGCGACCATCAAGGAATGC
GCAAGCCTTGAGAAGATAAGGGAGAAGATGGCGAAGGAGGGGCAGGAGGT
GAGCTACCACAGGTGGGCAGAGGCAGCTGGAATGGACGAGGCAGAGCTGA
TGAGCAGGCTGCAGGCAGGTTACTGCTGCCGGGAGAGGCTGCTGGTGACC
ACCGAGTGGCTGGTCAGGTGCATCGCAAGATCATACACCGGCATGGGGAC
GGCATTGGACGATCTGCTTCAGGCTGGGAAGATGGGCGTTCTTGACGGCG
CGGAGAAGTTCGACACCCGAAAGGGGTGCAGGTTCTCCACGTACGTCAAA
TACTGGATCAGGAAAGGGATGCTCGCTCTCCTCGCTGAGAATTCAGGAGT
CACCCTGCTGCCTGCAAGAATGGAGAGCATCATGCGCAAGGTGAAGGAGG
CGCGGCGCGGGATCCGGTACAGCCAGGGCAGGAACCCGTCGGACTCGGAG
ATCGCCGCGGCCGTCGGCGTGTCGGTGGCCAACGTGAGGCTGGCGCGCAA
GTGCTCCCGCAGGCCCGTCTCGCTCTACTCGGAGATCGGGATCGGGCAGC
ACGCCAAGTTCGCGGAGGTGATCCCGGACGAGGCGGCGGCGTCCGTGGAG
GCGCCCGACGAGGCGGCGCTGTTCCGGGGCCAGCTGAGGGAGCGGCTGCT
GCTGGTGCTGGGCAGGCTGCCCGCGCGGGAGGGACACGTGCTGAGGCTCC
GCCACGGGCTGGAGGACGGCCGGTGCAGGTCGCTGGAGGAGATCGGCGGC
ATGTACCGCGTGTCCAAGGAGTGGATCAGGAAGATCGAGAAGTCCGCCAT
GGCCAGGCTCAGGGACGACGACGACGTGCGTCGCGACCTCCACGACTTCG
TCTGCCGCTTCTAG
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protein sequence of Sh_008G08_p000050

>Sh_008G08_p000050 ID=Sh_008G08_p000050|Name=Sh_008G08_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=588bp
MGFQLIHGRPCAYCCPSSSSSSSSWMMQALPPKQSHHPLNGRKPIFSESL
AALAAMHLLLKRRRDRSSRDIASSAGVLQITENKSAAANLTKHKQVSAER
KLLDDALDRTTVQYESWMDEETSFWMERDHTNSTLQYGLLMQNLQELETS
LAGKDLKMLENDILAHIQQLGALRSFNASMTLGANLLDTLTHVSSPYDQS
DSSLLDHLIIKFDPETPLDEEQEDSEVVVVRSGKSQERKLKRTRASEKGS
RKSVKVNPRTPKKSRKASSSQFISEWKSHPGRRRIIVREQSALLATIKEC
ASLEKIREKMAKEGQEVSYHRWAEAAGMDEAELMSRLQAGYCCRERLLVT
TEWLVRCIARSYTGMGTALDDLLQAGKMGVLDGAEKFDTRKGCRFSTYVK
YWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRGIRYSQGRNPSDSE
IAAAVGVSVANVRLARKCSRRPVSLYSEIGIGQHAKFAEVIPDEAAASVE
APDEAALFRGQLRERLLLVLGRLPAREGHVLRLRHGLEDGRCRSLEEIGG
MYRVSKEWIRKIEKSAMARLRDDDDVRRDLHDFVCRF*
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mRNA from alignment at Sh_008G08:55693..58342+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_008G08_t000050 ID=Sh_008G08_t000050|Name=Sh_008G08_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=2650bp|location=Sequence derived from alignment at Sh_008G08:55693..58342+ (R570 Sugarcane cultivar)
TCCCAGCTGCCATTGCTGCTGCAACACGTACAGCACAGTACAGGAGGAAA AATAAAGAGGCTGTACTAACTGTATGGGGTTTCAGTTGATCCATGGCAGG CCATGCGCCTATTGCTGCCCGTCGTCCTCGTCCTCCTCCTCCTCGTGGAT GATGCAGGCCCTGCCCCCGAAACAGTCTCACCATCCATGTCAGTGCTCAT CTGCTCCTCAACTCTGATTACACCTGCATTTCCTGCTGTCATCCTGCGCT GTATGTAATTCTCTATTGATTGATGACATACTAGAAGATTACTGTTGTGA CGGACTGACGGTAGGTAGGTAATGTAACAGTAACACCTTCCTTTGCTTTT GTTCCAAAACGAACTAACCAAGGACATGCACGTGATTGCCTCTCTGTTTC TTTTTTCACTCCAAAACGTTGACTGAATATATAGCGTGTTCTTGCCATTT CTGCGTTGTTTACAGTGAATGGAAGGAAGCCAATTTTCTCTGAATCCCTT GCAGCACTGGCGGCCATGCATCTCCTGCTAAAACGTCGCAGAGACCGTAG CAGCAGGGACATTGCGTCTTCAGCCGGCGTGCTCCAAATCACAGAGAACA AATCAGCTGCGGCCAACTTAACAAAACACAAGCAGGTCCTCTTTCATATC CAACCCTTTGTGATCAGCAATTTTTTTTCTTCTTCTTTCTATTTGTTCGT GGTATTTACAGTGAGAATTGCAGGTGAGTGCAGAAAGGAAGCTCCTTGAT GACGCTCTTGACAGAACTACTGTACAGTATGAGAGCTGGATGGATGAAGA GACATCATTCTGGATGGAAAGGGATCACACGAACAGCACTTTGCAGTACG GTTTGTTAATGCAGAACCTTCAGGAGTTGGAGACGAGTTTGGCTGGTAAA GACTTGAAGATGCTGGAGAACGACATCCTTGCACACATTCAGCAGCTTGG AGCTCTGAGATCGTTCAACGCGTCTATGACCCTGGGTGCTAACCTACTAG ACACCTTAACACATGTCTCATCGCCATATGATCAATCAGACAGCTCTCTG CTTGACCACCTAATCATCAAGTTTGATCCGGAGACTCCTCTGGATGAGGA GCAAGAAGATAGCGAAGTAGTAGTCGTCCGGAGTGGCAAGAGTCAGGAGA GGAAGCTCAAGAGAACGAGAGCGTCAGAGAAAGGATCCAGGAAGTCGGTG AAGGTGAATCCACGAACACCCAAGAAATCCCGGAAGGCGAGTAGCAGCCA GTTTATATCCGAGTGGAAAAGTCACCCAGGACGAAGGAGGATCATTGTGC GTGAGCAATCAGCACTGCTAGCGACCATCAAGGTACTACTACTGGTGAAT TAGAATTACATTACATTACATTACAGCAGAGAATTGAATGTCAAATTAAA TTCTTCAGGAATGCGCAAGCCTTGAGAAGATAAGGGAGAAGATGGCGAAG GAGGGGCAGGAGGTGAGCTACCACAGGTGGGCAGAGGCAGCTGGAATGGA CGAGGCAGAGCTGATGAGCAGGCTGCAGGCAGGTTACTGCTGCCGGGAGA GGCTGCTGGTGACCACCGAGTGGCTGGTCAGGTGCATCGCAAGATCATAC ACCGGCATGGGGACGGCATTGGACGATCTGCTTCAGGTTCATATATCGAA ACACAACACTACTACTGCATCTTCATCAGTCACCATACTGATTATGTGTG ACTGAAGATCTTTGTTATTGTTGGCTTGAAATGGCATCGATCTCTGCAGG CTGGGAAGATGGGCGTTCTTGACGGCGCGGAGAAGTTCGACACCCGAAAG GGGTGCAGGTTCTCCACGTACGTCAAATACTGGATCAGGAAAGGGATGCT CGCTCTCCTCGCTGAGAATTCAGGAGTCACCCTGCTGCCTGTACGCACGC CTCGATCTCTGTCTGTAACCGTCTGCTAGCTTCTGGCGACGCCACTGAAC TGATCAGGAATTCACAATGCAAGTGCAGGCAAGAATGGAGAGCATCATGC GCAAGGTGAAGGAGGCGCGGCGCGGGATCCGGTACAGCCAGGGCAGGAAC CCGTCGGACTCGGAGATCGCCGCGGCCGTCGGCGTGTCGGTGGCCAACGT GAGGCTGGCGCGCAAGTGCTCCCGCAGGCCCGTCTCGCTCTACTCGGAGA TCGGGATCGGGCAGCACGCCAAGTTCGCGGAGGTGATCCCGGACGAGGCG GCGGCGTCCGTGGAGGCGCCCGACGAGGCGGCGCTGTTCCGGGGCCAGCT GAGGGAGCGGCTGCTGCTGGTGCTGGGCAGGCTGCCCGCGCGGGAGGGAC ACGTGCTGAGGCTCCGCCACGGGCTGGAGGACGGCCGGTGCAGGTCGCTG GAGGAGATCGGCGGCATGTACCGCGTGTCCAAGGAGTGGATCAGGAAGAT CGAGAAGTCCGCCATGGCCAGGCTCAGGGACGACGACGACGTGCGTCGCG ACCTCCACGACTTCGTCTGCCGCTTCTAGTGCACGTACTACACTGAAGCT GTGCACGTAGTACAATACTATACACACGAATTATACAGGTATATACGTAC ATATACATGACAGAAATTTGTGATCCGTCACGGTTACAATGTCGCTGGGA ATGTTTGAAAACGAAGAAGACCTTATTCTGGGCAGTAAACTAAATTACTT
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Coding sequence (CDS) from alignment at Sh_008G08:55693..58342+

>Sh_008G08_t000050 ID=Sh_008G08_t000050|Name=Sh_008G08_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=1764bp|location=Sequence derived from alignment at Sh_008G08:55693..58342+ (R570 Sugarcane cultivar)
ATGGGGTTTCAGTTGATCCATGGCAGGCCATGCGCCTATTGCTGCCCGTC
GTCCTCGTCCTCCTCCTCCTCGTGGATGATGCAGGCCCTGCCCCCGAAAC
AGTCTCACCATCCATTGAATGGAAGGAAGCCAATTTTCTCTGAATCCCTT
GCAGCACTGGCGGCCATGCATCTCCTGCTAAAACGTCGCAGAGACCGTAG
CAGCAGGGACATTGCGTCTTCAGCCGGCGTGCTCCAAATCACAGAGAACA
AATCAGCTGCGGCCAACTTAACAAAACACAAGCAGGTGAGTGCAGAAAGG
AAGCTCCTTGATGACGCTCTTGACAGAACTACTGTACAGTATGAGAGCTG
GATGGATGAAGAGACATCATTCTGGATGGAAAGGGATCACACGAACAGCA
CTTTGCAGTACGGTTTGTTAATGCAGAACCTTCAGGAGTTGGAGACGAGT
TTGGCTGGTAAAGACTTGAAGATGCTGGAGAACGACATCCTTGCACACAT
TCAGCAGCTTGGAGCTCTGAGATCGTTCAACGCGTCTATGACCCTGGGTG
CTAACCTACTAGACACCTTAACACATGTCTCATCGCCATATGATCAATCA
GACAGCTCTCTGCTTGACCACCTAATCATCAAGTTTGATCCGGAGACTCC
TCTGGATGAGGAGCAAGAAGATAGCGAAGTAGTAGTCGTCCGGAGTGGCA
AGAGTCAGGAGAGGAAGCTCAAGAGAACGAGAGCGTCAGAGAAAGGATCC
AGGAAGTCGGTGAAGGTGAATCCACGAACACCCAAGAAATCCCGGAAGGC
GAGTAGCAGCCAGTTTATATCCGAGTGGAAAAGTCACCCAGGACGAAGGA
GGATCATTGTGCGTGAGCAATCAGCACTGCTAGCGACCATCAAGGAATGC
GCAAGCCTTGAGAAGATAAGGGAGAAGATGGCGAAGGAGGGGCAGGAGGT
GAGCTACCACAGGTGGGCAGAGGCAGCTGGAATGGACGAGGCAGAGCTGA
TGAGCAGGCTGCAGGCAGGTTACTGCTGCCGGGAGAGGCTGCTGGTGACC
ACCGAGTGGCTGGTCAGGTGCATCGCAAGATCATACACCGGCATGGGGAC
GGCATTGGACGATCTGCTTCAGGCTGGGAAGATGGGCGTTCTTGACGGCG
CGGAGAAGTTCGACACCCGAAAGGGGTGCAGGTTCTCCACGTACGTCAAA
TACTGGATCAGGAAAGGGATGCTCGCTCTCCTCGCTGAGAATTCAGGAGT
CACCCTGCTGCCTGCAAGAATGGAGAGCATCATGCGCAAGGTGAAGGAGG
CGCGGCGCGGGATCCGGTACAGCCAGGGCAGGAACCCGTCGGACTCGGAG
ATCGCCGCGGCCGTCGGCGTGTCGGTGGCCAACGTGAGGCTGGCGCGCAA
GTGCTCCCGCAGGCCCGTCTCGCTCTACTCGGAGATCGGGATCGGGCAGC
ACGCCAAGTTCGCGGAGGTGATCCCGGACGAGGCGGCGGCGTCCGTGGAG
GCGCCCGACGAGGCGGCGCTGTTCCGGGGCCAGCTGAGGGAGCGGCTGCT
GCTGGTGCTGGGCAGGCTGCCCGCGCGGGAGGGACACGTGCTGAGGCTCC
GCCACGGGCTGGAGGACGGCCGGTGCAGGTCGCTGGAGGAGATCGGCGGC
ATGTACCGCGTGTCCAAGGAGTGGATCAGGAAGATCGAGAAGTCCGCCAT
GGCCAGGCTCAGGGACGACGACGACGTGCGTCGCGACCTCCACGACTTCG
TCTGCCGCTTCTAG
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