Sh_009H11_t000010

Overview
NameSh_009H11_t000010
Unique NameSh_009H11_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009H11contigSh_009H11:2305..3537
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to OSJNBa0042I15.15 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009H11_g000010Sh_009H11_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009H11_p000010Sh_009H11_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009H11_t000010 ID=Sh_009H11_t000010|Name=Sh_009H11_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=582bp
ATGACTTTGGAGAGGGCAGTGTTGGCAGCTAGCAGCGAGCCAGCGACGAC
GACGCAGCAGGGTGATCAGATGGAGTGCAGCGGCAAGGAGCAGCAGATGC
AGATCGTGTGCGTGCGGAGCGCGTCCACGGGCGCCGCCGTGGTCGGCGAG
GAGGTGGTAGAGTGGGCGGAGGAGCAGTCGTCGCGGTCGGCGCTGTCGCT
GTTCAAGGAGAAGGAGGAGGAGATCGAGCGCAAGAAGCTGGAGGTGCGGG
ACAAGGTGTTCTCCATGCTGGGCCGGGTGGAGGAGGAGACCAAGCGCCTG
GCCTTCATCCGCCAGGAGCTGGAGCTCATGGCCGACCCCACGCGCCGGGA
GGTCGACGCCATCCGCAAGCGGATCGACAAGGTCAACAAGCAGCTCAAGC
CGCTCGCCAAGACATGCCTCAAAAAGGAGAAGGAATACAAGATGTGCCTC
GAGGCCTACAACGAGAAGAGCAACGAGAAAGCCACGCTGGTCAACAGGCT
AATGGAGCTCGTAAGCGAGAGCGAGAGGCTGCGGATGAAGAAACTCGAAG
AGCTCAACAAGACGATAGAGTCCCTCTACTAG
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protein sequence of Sh_009H11_p000010

>Sh_009H11_p000010 ID=Sh_009H11_p000010|Name=Sh_009H11_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=194bp
MTLERAVLAASSEPATTTQQGDQMECSGKEQQMQIVCVRSASTGAAVVGE
EVVEWAEEQSSRSALSLFKEKEEEIERKKLEVRDKVFSMLGRVEEETKRL
AFIRQELELMADPTRREVDAIRKRIDKVNKQLKPLAKTCLKKEKEYKMCL
EAYNEKSNEKATLVNRLMELVSESERLRMKKLEELNKTIESLY*
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mRNA from alignment at Sh_009H11:2305..3537-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009H11_t000010 ID=Sh_009H11_t000010|Name=Sh_009H11_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1233bp|location=Sequence derived from alignment at Sh_009H11:2305..3537- (R570 Sugarcane cultivar)
GAGTAGCTAGTATAGGACACTAGCTGTACTCAGCTCTCGATCGGTTGCAA AACAATAAAAAGGTGAGGGAGACAGAAGACGCCCCGGGAGCACAGGGGGA AGCTGCAGGAATAAATAGACGAACGGTTGTTAGATGCAGGCTACTCCTAC TACCAGTTTCTTACATGACTTTGGAGAGGGCAGTGTTGGCAGCTAGCAGC GAGCCAGCGACGACGACGCAGCAGGGTGATCAGATGGAGTGCAGCGGCAA GGAGCAGCAGATGCAGATCGTGTGCGTGCGGAGCGCGTCCACGGGCGCCG CCGTGGTCGGCGAGGAGGTGGTAGAGTGGGCGGAGGAGCAGTCGTCGCGG TCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGCAAGAA GCTGGAGGTGCGGGACAAGGTGTTCTCCATGCTGGGCCGGGTGGAGGAGG AGACCAAGCGCCTGGCCTTCATCCGCCAGGAGCTGGAGCTCATGGCCGAC CCCACGCGCCGGGAGGTCGACGCCATCCGCAAGCGGATCGACAAGGTCAA CAAGCAGCTCAAGCCGCTCGCCAAGACATGCCTCAAAAAGGTACGCTAAA AACACTGGAACACAAGTATTTTTTTTTTCATTCGGTTTCACTTTGGTCAG ATGGCTAGAAGTCAAGCAGATAGCAACACCGATCGTATATTTGTTTCCGA ACATGCAGGAGAAGGAATACAAGATGTGCCTCGAGGCCTACAACGAGAAG AGCAACGAGAAAGCCACGCTGGTCAACAGGCTAATGGAGGTTGACTCAAC TGCTCGATACCTTTGCAATCTGCACGCTATAGCTTTTGTTTTGCGAACCC TTTGCATTTCCATAATATTACTAGGCCTAACCAGAATTATTAGACTTGGT CCTCTAAAACAACGACGATTTGTTTTTTTTTCTTTGGCAGCTCGTAAGCG AGAGCGAGAGGCTGCGGATGAAGAAACTCGAAGAGCTCAACAAGACGATA GAGTCCCTCTACTAGATCTGCTCTCACGGGAGAAAAAGAAGATGATGGTA AGGTAGTCGTGGTATCCCGGCCACACAGGAGGAACTAGCATTGCCAGTAG CTCAACGTGCATTTTTTTTGCGACGTGCATTTTTTTTTTGCGACGTGCTT GATTATTCGATTTGTGTATTTTTACACGTGATTTGTAATCGATGGTTCAC TATCCTTGACTTGTAATTGCTCTGTGCAGTCGT
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Coding sequence (CDS) from alignment at Sh_009H11:2305..3537-

>Sh_009H11_t000010 ID=Sh_009H11_t000010|Name=Sh_009H11_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=582bp|location=Sequence derived from alignment at Sh_009H11:2305..3537- (R570 Sugarcane cultivar)
ATGACTTTGGAGAGGGCAGTGTTGGCAGCTAGCAGCGAGCCAGCGACGAC
GACGCAGCAGGGTGATCAGATGGAGTGCAGCGGCAAGGAGCAGCAGATGC
AGATCGTGTGCGTGCGGAGCGCGTCCACGGGCGCCGCCGTGGTCGGCGAG
GAGGTGGTAGAGTGGGCGGAGGAGCAGTCGTCGCGGTCGGCGCTGTCGCT
GTTCAAGGAGAAGGAGGAGGAGATCGAGCGCAAGAAGCTGGAGGTGCGGG
ACAAGGTGTTCTCCATGCTGGGCCGGGTGGAGGAGGAGACCAAGCGCCTG
GCCTTCATCCGCCAGGAGCTGGAGCTCATGGCCGACCCCACGCGCCGGGA
GGTCGACGCCATCCGCAAGCGGATCGACAAGGTCAACAAGCAGCTCAAGC
CGCTCGCCAAGACATGCCTCAAAAAGGAGAAGGAATACAAGATGTGCCTC
GAGGCCTACAACGAGAAGAGCAACGAGAAAGCCACGCTGGTCAACAGGCT
AATGGAGCTCGTAAGCGAGAGCGAGAGGCTGCGGATGAAGAAACTCGAAG
AGCTCAACAAGACGATAGAGTCCCTCTACTAG
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