Sh_009H11_t000070

Overview
NameSh_009H11_t000070
Unique NameSh_009H11_t000070
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length2391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009H11contigSh_009H11:64753..67223
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Pentatricopeptide (PPR) repeat-containing protein-like
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009H11_g000070Sh_009H11_g000070R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009H11_p000070Sh_009H11_p000070R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009H11_t000070 ID=Sh_009H11_t000070|Name=Sh_009H11_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=2391bp
ATGGCGCCTCCTCCTCCTCATCGCTTGCTGCCGCGCTCTTCCAGCTTTAC
GAGCAGCGTCATCACCCCCGCGCCCCCACACAGGGGCAGCCACAGACCCA
ATACGTCCGTCCCAAACGCCTCCACCACTACCGCCACCGCGGCGCAGCTC
TCGCTGCTCCGCGCCCACGCCCGCGCCGGCCGGATGCGGCCCGCGCGGGA
GGTATTCGACGCAATGCCGGATCGAGGGAGGTCCCTCGTCGCCTGGACAA
CGCTCATGTCCGGGTACGCCACCCACGGTCCAGCCTCCGAGGCGCTCGAA
CTGCTCCTCTGCATGCTCGGTCTTCTCGTCAGACCCGACGCCTTCGTCTT
CTCTGTCGCGCTGCGAGCCTGCGCCGCCGTCGGGAGCCTTCGACTCGGCA
GGCAGCTCCACGGCGCCGTCGCCAAGCTCGGGTACGTGGGCGCCGACCTC
TTTGTGGCCAACGGCCTCGTCACCATGTACTCGAGCTGCCAGTCCCTCCG
TTGCGCTGAGAAGGTCTTCGGCAGTATCACCTCTCCGGACCTGGTTTCGT
GGACATCCATGCTCAGTGCATACACCGAGAACGGATGTGACGCCGAAGCG
CTGATGCTGTTCATGGAAACGGTCTGTGATGGCGTCGCGTGCGATGCTTT
TACACTGTCGGTGGCACTCAGGGCAGCTTCGAGTTTGGGCCATGTGGGAT
TGGGCCATCAGCTACACTGCTGCATGATCAAGATGGGGTTGGTCGGCAAG
GAGTTCCTGGATAATTGTCTGATCGGATTCTATGGACGCTCAGGTGAACT
GCAGCTGATGCGAAGCGTGTTCGATGAGATGAATGGCAAAAATTTGGTTT
CTTGGAACACCATAATCCAGTGTTATGCAGAAAACTTGTGCCATGAAGAA
GCCTCAGCTCATTTTCGTGCTATGATGTTTGAATTCGCAGAATGCGATGA
GTTTACGCTGGGCAGCATTCTTCATGTCGTTACCAGAACTGGTGCTTTTG
GTCATGGTATGGAAATACATGGCTACCTCATCAGAGCCGGCTTGGACTCT
GACAAGCACGTTATGAGTGCTCTCATTGATATGCATGTCAATTGGGCTAC
TCTTCGTAAGAGGTACCGGGTGTTTCCTTTGAGAATGTTAAAATATTATC
TGACAGTCCAGGGCAAGCTAGATCAATTCATCGTGGCAAGCAGTCTGAAG
TCATGCGCTTCTGGTCTAGATCTGGTAGCAGGGAGGATGTTGCATGCTTG
CATTTTAAAGTCTAATATGAATCCAGATTCTTTTGTTATTAGTTCGTTGG
TCGACATGTATGCTAAATGCGGTGCTCTGAAGGAATCAAATCTGCTGTTT
TCAAGAACCAAGAATCCAGGTACAGCTGTATGGTCTGCTGCTATCTCAGG
AAACTGTCTGAATGGCCAGTACGGAAGAGCAGTGCACTTGTTTAGGAGGA
TGCAGTCAGAGCATGTTCAACCTAACGAATTCACCTACACCGCTATACTT
ACGGCATGTATGGCTCTTGGAGATACTGAAAGTGGTATGGAGATCCACAG
CAACTCGATTCGAAATGGGTATGGAACCAACACCTCTGTTCTGAAAAGCT
TGATTACCTTTTACCTAAGACAAGGTCGGTACCACCAGGCTCTGAAACTG
TGCTTAGCACTCTCAAACCATGATATTTCTTGGGACACATTGGTTGAATC
ATTTTCTCAGGTTGACCATCATGTTGGAATAGTTAATCTCTTTCATATTA
TCCAACGATGTGGCGCGAACCTTCACTACCATACTGCACGTCTCATCTTG
AGTTCGTGTGGGAAGCTGGGACTTCTCGAGGAAGGGTTGCAAGCACATGC
CTACATGACCAAGCGTGGCCTTGCTTCCACAGCTTGTACCAACAGCTACC
TCATCAACATGTACTCCAGTTGTGGTAGCCTTAGGCATGCGTTCGATGCC
TTCAACTATATGCCTGACAAGGATGCATCTTCCTGGACCTCAATAGTGGC
AGCAAACGTCGAGAATGGCTGCCCAGAGACTGCCATTCGCCTGTTTTCAC
AGATGCAGAAGGAGAAATGCCGTCCGACACCAGAGGCATTTTTATATGTG
CTGAAGGCCTGCGCGAGAACTGGCCTAGTAAATGACGCATTCAGGTTTTT
TGCGTCCATGACGGAGGTTTACAAGATACAGCCCTCGGAGGAGCATTATT
CCCACATGATTGAAGTCTTGAGTCGTGCGGGGATGTTCAAGGAGGCAGAG
CATTTCATCGACAGTGTCGTTCCTTCTGAATCTGGTGCATCGGCCTGGAG
TTTGCTTTGTGCTGCTGCGAAACAGAACGGAAATGGTAAGACGGTAGAGC
TTGCAGGAGACAGACTAGCAAGGCTTCCTGGTGGCTGCTGA
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protein sequence of Sh_009H11_p000070

>Sh_009H11_p000070 ID=Sh_009H11_p000070|Name=Sh_009H11_p000070|organism=R570 Sugarcane cultivar|type=polypeptide|length=797bp
MAPPPPHRLLPRSSSFTSSVITPAPPHRGSHRPNTSVPNASTTTATAAQL
SLLRAHARAGRMRPAREVFDAMPDRGRSLVAWTTLMSGYATHGPASEALE
LLLCMLGLLVRPDAFVFSVALRACAAVGSLRLGRQLHGAVAKLGYVGADL
FVANGLVTMYSSCQSLRCAEKVFGSITSPDLVSWTSMLSAYTENGCDAEA
LMLFMETVCDGVACDAFTLSVALRAASSLGHVGLGHQLHCCMIKMGLVGK
EFLDNCLIGFYGRSGELQLMRSVFDEMNGKNLVSWNTIIQCYAENLCHEE
ASAHFRAMMFEFAECDEFTLGSILHVVTRTGAFGHGMEIHGYLIRAGLDS
DKHVMSALIDMHVNWATLRKRYRVFPLRMLKYYLTVQGKLDQFIVASSLK
SCASGLDLVAGRMLHACILKSNMNPDSFVISSLVDMYAKCGALKESNLLF
SRTKNPGTAVWSAAISGNCLNGQYGRAVHLFRRMQSEHVQPNEFTYTAIL
TACMALGDTESGMEIHSNSIRNGYGTNTSVLKSLITFYLRQGRYHQALKL
CLALSNHDISWDTLVESFSQVDHHVGIVNLFHIIQRCGANLHYHTARLIL
SSCGKLGLLEEGLQAHAYMTKRGLASTACTNSYLINMYSSCGSLRHAFDA
FNYMPDKDASSWTSIVAANVENGCPETAIRLFSQMQKEKCRPTPEAFLYV
LKACARTGLVNDAFRFFASMTEVYKIQPSEEHYSHMIEVLSRAGMFKEAE
HFIDSVVPSESGASAWSLLCAAAKQNGNGKTVELAGDRLARLPGGC*
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mRNA from alignment at Sh_009H11:64753..67223-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009H11_t000070 ID=Sh_009H11_t000070|Name=Sh_009H11_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=2471bp|location=Sequence derived from alignment at Sh_009H11:64753..67223- (R570 Sugarcane cultivar)
ATGGCGCCTCCTCCTCCTCATCGCTTGCTGCCGCGCTCTTCCAGCTTTAC GAGCAGCGTCATCACCCCCGCGCCCCCACACAGGGGCAGCCACAGACCCA ATACGTCCGTCCCAAACGCCTCCACCACTACCGCCACCGCGGCGCAGCTC TCGCTGCTCCGCGCCCACGCCCGCGCCGGCCGGATGCGGCCCGCGCGGGA GGTATTCGACGCAATGCCGGATCGAGGGAGGTCCCTCGTCGCCTGGACAA CGCTCATGTCCGGGTACGCCACCCACGGTCCAGCCTCCGAGGCGCTCGAA CTGCTCCTCTGCATGCTCGGTCTTCTCGTCAGACCCGACGCCTTCGTCTT CTCTGTCGCGCTGCGAGCCTGCGCCGCCGTCGGGAGCCTTCGACTCGGCA GGCAGCTCCACGGCGCCGTCGCCAAGCTCGGGTACGTGGGCGCCGACCTC TTTGTGGCCAACGGCCTCGTCACCATGTACTCGAGCTGCCAGTCCCTCCG TTGCGCTGAGAAGGTCTTCGGCAGTATCACCTCTCCGGACCTGGTTTCGT GGACATCCATGCTCAGTGCATACACCGAGAACGGATGTGACGCCGAAGCG CTGATGCTGTTCATGGAAACGGTCTGTGATGGCGTCGCGTGCGATGCTTT TACACTGTCGGTGGCACTCAGGGCAGCTTCGAGTTTGGGCCATGTGGGAT TGGGCCATCAGCTACACTGCTGCATGATCAAGATGGGGTTGGTCGGCAAG GAGTTCCTGGATAATTGTCTGATCGGATTCTATGGACGCTCAGGTGAACT GCAGCTGATGCGAAGCGTGTTCGATGAGATGAATGGCAAAAATTTGGTTT CTTGGAACACCATAATCCAGTGTTATGCAGAAAACTTGTGCCATGAAGAA GCCTCAGCTCATTTTCGTGCTATGATGTTTGAATTCGCAGAATGCGATGA GTTTACGCTGGGCAGCATTCTTCATGTCGTTACCAGAACTGGTGCTTTTG GTCATGGTATGGAAATACATGGCTACCTCATCAGAGCCGGCTTGGACTCT GACAAGCACGTTATGAGTGCTCTCATTGATATGCATGTCAATTGGGCTAC TCTTCGTAAGAGGTACCGGGTGTTTCCTTTGAGAATGTTAAAATATTATC TGACAGTCCAGGGCAAGCTAGATCAATTCATCGTGGCAAGCAGTCTGAAG TCATGCGCTTCTGGTCTAGATCTGGTAGCAGGGAGGATGTTGCATGCTTG CATTTTAAAGTCTAATATGAATCCAGATTCTTTTGTTATTAGTTCGTTGG TCGACATGTATGCTAAATGCGGTGCTCTGAAGGAATCAAATCTGCTGTTT TCAAGAACCAAGAATCCAGGTACAGCTGTATGGTCTGCTGCTATCTCAGG AAACTGTCTGAATGGCCAGTACGGAAGAGCAGTGCACTTGTTTAGGAGGA TGCAGTCAGAGCATGTTCAACCTAACGAATTCACCTACACCGCTATACTT ACGGCATGTATGGCTCTTGGAGATACTGAAAGTGGTATGGAGATCCACAG CAACTCGATTCGAAATGGGTATGGAACCAACACCTCTGTTCTGAAAAGCT TGATTACCTTTTACCTAAGACAAGGTCGGTACCACCAGGCTCTGAAACTG TGCTTAGCACTCTCAAACCATGATATTTCTTGGGACACATTGGTTGAATC ATTTTCTCAGGTTGACCATCATGTTGGAATAGTTAATCTCTTTCATATTA TCCAACGATGTGGCGCGAACCTTCACTACCATACTGCACGTCTCATCTTG AGTTCGTGTGGGAAGCTGGGACTTCTCGAGGAAGGGTTGCAAGCACATGC CTACATGACCAAGCGTGGCCTTGCTTCCACAGCTTGTACCAACAGCTACC TCATCAACATGTACTCCAGTTGTGGTAGCCTTAGGCATGCGTTCGATGCC TTCAACTATATGCCTGACAAGGATGCATCTTCCTGGACCTCAATAGTGGC AGCAAACGTCGAGAATGGCTGCCCAGAGACTGCCATTCGCCTGTTTTCAC AGATGCAGAAGGAGAAATGCCGTCCGACACCAGAGGCATTTTTATATGTG CTGAAGGCCTGCGCGAGAACTGGCCTAGTAAATGACGCATTCAGGTTTTT TGCGTCCATGACGGAGGTTTACAAGATACAGCCCTCGGAGGAGCATTATT CCCACATGATTGAAGTCTTGAGTCGTGCGGGGATGTTCAAGGAGGCAGAG CATTTCATCGACAGTGTCGTTCCTTCTGAATCTGGTGCATCGGCCTGGAG TTTGCTTTGTGCTGCTGCGAAACAGAACGGAAATGGTAAGACGGTAGAGC TTGCAGGAGACAGACTAGCAAGGCTTCCTGGTGGCTGCTGAGTGTTGAGC AATGCTTCGCTTTGTATGATGAACCTGTCCAACATTTACATGTAAAACTC TAGCACTACTAAAACTCAAGG
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Coding sequence (CDS) from alignment at Sh_009H11:64753..67223-

>Sh_009H11_t000070 ID=Sh_009H11_t000070|Name=Sh_009H11_t000070|organism=R570 Sugarcane cultivar|type=CDS|length=2391bp|location=Sequence derived from alignment at Sh_009H11:64753..67223- (R570 Sugarcane cultivar)
ATGGCGCCTCCTCCTCCTCATCGCTTGCTGCCGCGCTCTTCCAGCTTTAC
GAGCAGCGTCATCACCCCCGCGCCCCCACACAGGGGCAGCCACAGACCCA
ATACGTCCGTCCCAAACGCCTCCACCACTACCGCCACCGCGGCGCAGCTC
TCGCTGCTCCGCGCCCACGCCCGCGCCGGCCGGATGCGGCCCGCGCGGGA
GGTATTCGACGCAATGCCGGATCGAGGGAGGTCCCTCGTCGCCTGGACAA
CGCTCATGTCCGGGTACGCCACCCACGGTCCAGCCTCCGAGGCGCTCGAA
CTGCTCCTCTGCATGCTCGGTCTTCTCGTCAGACCCGACGCCTTCGTCTT
CTCTGTCGCGCTGCGAGCCTGCGCCGCCGTCGGGAGCCTTCGACTCGGCA
GGCAGCTCCACGGCGCCGTCGCCAAGCTCGGGTACGTGGGCGCCGACCTC
TTTGTGGCCAACGGCCTCGTCACCATGTACTCGAGCTGCCAGTCCCTCCG
TTGCGCTGAGAAGGTCTTCGGCAGTATCACCTCTCCGGACCTGGTTTCGT
GGACATCCATGCTCAGTGCATACACCGAGAACGGATGTGACGCCGAAGCG
CTGATGCTGTTCATGGAAACGGTCTGTGATGGCGTCGCGTGCGATGCTTT
TACACTGTCGGTGGCACTCAGGGCAGCTTCGAGTTTGGGCCATGTGGGAT
TGGGCCATCAGCTACACTGCTGCATGATCAAGATGGGGTTGGTCGGCAAG
GAGTTCCTGGATAATTGTCTGATCGGATTCTATGGACGCTCAGGTGAACT
GCAGCTGATGCGAAGCGTGTTCGATGAGATGAATGGCAAAAATTTGGTTT
CTTGGAACACCATAATCCAGTGTTATGCAGAAAACTTGTGCCATGAAGAA
GCCTCAGCTCATTTTCGTGCTATGATGTTTGAATTCGCAGAATGCGATGA
GTTTACGCTGGGCAGCATTCTTCATGTCGTTACCAGAACTGGTGCTTTTG
GTCATGGTATGGAAATACATGGCTACCTCATCAGAGCCGGCTTGGACTCT
GACAAGCACGTTATGAGTGCTCTCATTGATATGCATGTCAATTGGGCTAC
TCTTCGTAAGAGGTACCGGGTGTTTCCTTTGAGAATGTTAAAATATTATC
TGACAGTCCAGGGCAAGCTAGATCAATTCATCGTGGCAAGCAGTCTGAAG
TCATGCGCTTCTGGTCTAGATCTGGTAGCAGGGAGGATGTTGCATGCTTG
CATTTTAAAGTCTAATATGAATCCAGATTCTTTTGTTATTAGTTCGTTGG
TCGACATGTATGCTAAATGCGGTGCTCTGAAGGAATCAAATCTGCTGTTT
TCAAGAACCAAGAATCCAGGTACAGCTGTATGGTCTGCTGCTATCTCAGG
AAACTGTCTGAATGGCCAGTACGGAAGAGCAGTGCACTTGTTTAGGAGGA
TGCAGTCAGAGCATGTTCAACCTAACGAATTCACCTACACCGCTATACTT
ACGGCATGTATGGCTCTTGGAGATACTGAAAGTGGTATGGAGATCCACAG
CAACTCGATTCGAAATGGGTATGGAACCAACACCTCTGTTCTGAAAAGCT
TGATTACCTTTTACCTAAGACAAGGTCGGTACCACCAGGCTCTGAAACTG
TGCTTAGCACTCTCAAACCATGATATTTCTTGGGACACATTGGTTGAATC
ATTTTCTCAGGTTGACCATCATGTTGGAATAGTTAATCTCTTTCATATTA
TCCAACGATGTGGCGCGAACCTTCACTACCATACTGCACGTCTCATCTTG
AGTTCGTGTGGGAAGCTGGGACTTCTCGAGGAAGGGTTGCAAGCACATGC
CTACATGACCAAGCGTGGCCTTGCTTCCACAGCTTGTACCAACAGCTACC
TCATCAACATGTACTCCAGTTGTGGTAGCCTTAGGCATGCGTTCGATGCC
TTCAACTATATGCCTGACAAGGATGCATCTTCCTGGACCTCAATAGTGGC
AGCAAACGTCGAGAATGGCTGCCCAGAGACTGCCATTCGCCTGTTTTCAC
AGATGCAGAAGGAGAAATGCCGTCCGACACCAGAGGCATTTTTATATGTG
CTGAAGGCCTGCGCGAGAACTGGCCTAGTAAATGACGCATTCAGGTTTTT
TGCGTCCATGACGGAGGTTTACAAGATACAGCCCTCGGAGGAGCATTATT
CCCACATGATTGAAGTCTTGAGTCGTGCGGGGATGTTCAAGGAGGCAGAG
CATTTCATCGACAGTGTCGTTCCTTCTGAATCTGGTGCATCGGCCTGGAG
TTTGCTTTGTGCTGCTGCGAAACAGAACGGAAATGGTAAGACGGTAGAGC
TTGCAGGAGACAGACTAGCAAGGCTTCCTGGTGGCTGCTGA
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