Sh_009H11_t000080

Overview
NameSh_009H11_t000080
Unique NameSh_009H11_t000080
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009H11contigSh_009H11:69161..70527
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Copper chaperone homolog CCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009H11_g000080Sh_009H11_g000080R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009H11_p000080Sh_009H11_p000080R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009H11_t000080 ID=Sh_009H11_t000080|Name=Sh_009H11_t000080|organism=R570 Sugarcane cultivar|type=mRNA|length=336bp
ATGGCCGCTGAGACTGTTGTCCTCAAGGTTGCTATGTCATGCGAGGGTTG
CGCCGGGGCGGTCAGAAGAGTGCTCTCCAAGATGGAAGGAATTGAGACCT
TCGACATAGACCTCAAGGAGCAGAAGGTGACAGTGAAAGGCAATGTTAAG
CCTGAGGATGTCTTCCAGACGGTTTCCAAGTCGGGGAAGAAGACCTCCTA
CTGGGAGGGCGAAGCCACAGCCCCGGACGCTTCGGCTCCAGCAGCAGCAG
AAGCAGCTCCCAACACCGCGGCAGAAGCGCCTGCGGATGCTTCTGCTGCT
GTGCCAGAGATCACTCCAGCCAAAGCTGACGCTTGA
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protein sequence of Sh_009H11_p000080

>Sh_009H11_p000080 ID=Sh_009H11_p000080|Name=Sh_009H11_p000080|organism=R570 Sugarcane cultivar|type=polypeptide|length=112bp
MAAETVVLKVAMSCEGCAGAVRRVLSKMEGIETFDIDLKEQKVTVKGNVK
PEDVFQTVSKSGKKTSYWEGEATAPDASAPAAAEAAPNTAAEAPADASAA
VPEITPAKADA*
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mRNA from alignment at Sh_009H11:69161..70527-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009H11_t000080 ID=Sh_009H11_t000080|Name=Sh_009H11_t000080|organism=R570 Sugarcane cultivar|type=mRNA|length=1367bp|location=Sequence derived from alignment at Sh_009H11:69161..70527- (R570 Sugarcane cultivar)
GCCGAGGTCGAGAGTTCTCAACGACGTCTGCCGGTAGTCCTCCTGCTCCT AGCTCCTTCCCGGCTGCCGCGTGAGTCGAGAGCCGTGAGCCATGGCCGCT GAGGTAACCAACAATTAATCGTCGCCTTATTCCCTGCCTCCTCTCCTCAT ATAGAATGGCTTCTCAATCTGTAAAATTACTACTTTTCGATATGGTCGAT TTTAGGGATTTAGAATTAGAACAAAGCAAGTACATAAGGAGAACACAACT GATCGCCTCAGTTAATTTTCTGAGTTTTTCAGATGTAGGATAACACATTC ATTCGAGTTTCTAATACTATATTTGATTGTTGGGAACGAGAGCTAGCTGA TGTTAATTTCACTGGTCTGATTATCTTCGTTTTCTCTCAGTTCTTGATGT ACATGGACATTCAACCCCTTGATTAATTTTTGTGCTGGTACCATATATGA TATGAGAGCCTAATTAATATGATGTTTCGCTGGTCTAATTGTCTTTAGTT GACAATGCAGACTGTTGTCCTCAAGGTTGCTATGTCATGCGAGGGTTGCG CCGGGGCGGTCAGAAGAGTGCTCTCCAAGATGGAAGGTTATTATTTTTTT TTTCACTGTAATTTCTACACAAAGTCTTACTAACAGACAGATTGATTCTT GCGCCTGCACAATGGAAAGCTTACCAGAAAATTAATCATTTGATCAGAAG GGGGAAACCCTAATAATCAATCATCAAAACGTTACAAACGCTCATGCGTT ACCACTTACCAGCTTACCACCCGTGGATATATATGAGTGACCTACCTCTT ACGACGCTTGTTCTTATGGAATCAGGAATTGAGACCTTCGACATAGACCT CAAGGAGCAGAAGGTGACAGTGAAAGGCAATGTTAAGCCTGAGGATGTCT TCCAGACGGTTTCCAAGTCGGGGAAGAAGACCTCCTACTGGGAGGGCGAA GCCACAGCCCCGGACGCTTCGGCTCCAGCAGCAGCAGAAGCAGCTCCCAA CACCGCGGCAGAAGCGCCTGCGGATGCTTCTGCTGCTGTGCCAGAGATCA CTCCAGCCAAAGCTGACGCTTGATCGTCACACTATTACTCACATGTGATG CTGCGATTCCTAAACCTTAATCTAGAAATAGCTGGGGGAAACGAGTCTTG ATGGGGTTAGCATCATGTTGTTGCCGGTCTATCAAGTGACTAAGAATAAT GGAATAAATGATAACCCAGTGTGTATGATTTCCGTTGTGATGAACACATC CCTTGCAGGATTGTTGTTTAGTAGATTTTACTTCTACTGTGGCTTTGGAG TTCTTCCAAAACACTTGTTCAAGAACTTCTTCTCTGACAGAAAATAACAT GGGTGCAGTTCATGCTT
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Coding sequence (CDS) from alignment at Sh_009H11:69161..70527-

>Sh_009H11_t000080 ID=Sh_009H11_t000080|Name=Sh_009H11_t000080|organism=R570 Sugarcane cultivar|type=CDS|length=336bp|location=Sequence derived from alignment at Sh_009H11:69161..70527- (R570 Sugarcane cultivar)
ATGGCCGCTGAGACTGTTGTCCTCAAGGTTGCTATGTCATGCGAGGGTTG
CGCCGGGGCGGTCAGAAGAGTGCTCTCCAAGATGGAAGGAATTGAGACCT
TCGACATAGACCTCAAGGAGCAGAAGGTGACAGTGAAAGGCAATGTTAAG
CCTGAGGATGTCTTCCAGACGGTTTCCAAGTCGGGGAAGAAGACCTCCTA
CTGGGAGGGCGAAGCCACAGCCCCGGACGCTTCGGCTCCAGCAGCAGCAG
AAGCAGCTCCCAACACCGCGGCAGAAGCGCCTGCGGATGCTTCTGCTGCT
GTGCCAGAGATCACTCCAGCCAAAGCTGACGCTTGA
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