Sh_009H11_t000100

Overview
NameSh_009H11_t000100
Unique NameSh_009H11_t000100
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009H11contigSh_009H11:84920..85838
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteChromophore lyase CRL, chloroplastic
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009H11_g000100Sh_009H11_g000100R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009H11_p000100Sh_009H11_p000100R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009H11_t000100 ID=Sh_009H11_t000100|Name=Sh_009H11_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=474bp
ATGACTGTTGAGGACCTAGTTCCTGCATGGAAAGAGCATGGTCTCCCATT
TTTTATGCGACATAACCACTTAGTTTCAATGCATTCTATAAGCTGTATTC
ACATCTACACTGTTTACCTTTGGTGTTTAGGATATCGCAGAGCATCTGAC
CACCATACACTTGTCACGGTGTGGCCTGTGGAAAACGTTGCTTATATGAA
AGGATCTACCCCACCTGAAGGTTTTCCCAACAACTGGAATGGTGCGTCAT
ATTGTACATCGGATTTGTCCATCCACAAAAACGGTGAAGTACATATCTGG
GACAAAGGTTTTGACGATGAAGGGAACCAGGTTTGGGGAACCAAGGTTGG
CCCTTACGAGTTCAAGCCTGCCCCCAAATCCAAATATGACGACATGTTCT
CGCCATTAAATTTCTCCGCCCCTTTGTCACTAGAGAAGAAGTTGGATAAA
GCATATGTAATCGATGACCAGTAG
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protein sequence of Sh_009H11_p000100

>Sh_009H11_p000100 ID=Sh_009H11_p000100|Name=Sh_009H11_p000100|organism=R570 Sugarcane cultivar|type=polypeptide|length=158bp
MTVEDLVPAWKEHGLPFFMRHNHLVSMHSISCIHIYTVYLWCLGYRRASD
HHTLVTVWPVENVAYMKGSTPPEGFPNNWNGASYCTSDLSIHKNGEVHIW
DKGFDDEGNQVWGTKVGPYEFKPAPKSKYDDMFSPLNFSAPLSLEKKLDK
AYVIDDQ*
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mRNA from alignment at Sh_009H11:84920..85838-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009H11_t000100 ID=Sh_009H11_t000100|Name=Sh_009H11_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=919bp|location=Sequence derived from alignment at Sh_009H11:84920..85838- (R570 Sugarcane cultivar)
TCCAGGCCACTATGTGCTTCACTTAGTGTAATACTAGGATGACTGTTGAG GACCTAGTTCCTGCATGGAAAGAGCATGGTCTCCCATTTTTTATGCGACA TAACCACTTAGTTTCAATGCATTCTATAAGCTGTATTCACATCTACACTG TAACTCCATATGGAGTCATGTGTTGACTGATATAGCTTTGCATAGTACAT TCCTAGCTCAAGCTTTGTACAACTTGTGATGTTCGTTTTATTCACACAAG GTACTGTCTAATGTTACCCTAAGTATCTTATATATCGCTCTAGTATTTAG GTTTACCTTTGGTGTTTAGGATATCGCAGAGCATCTGACCACCATACACT TGTCACGGTGTGGCCTGTGGAAAACGTTGCTTATATGAAAGGATCTACCC CACCTGAAGGTTTTCCCAACAACTGGGTGAGCTAATTGCTCTCCTCTCAA TTAGCAATTCAGCATATTCAGTTCTCTTTCGGACTGAATAATTTGCAGAC ATCTTTTTAATTTAATACTGCATCAGAGCTCACTAGTGGTAATCCTTGTC CACAATGTTTCGCTTGTTCCCATCTCAACATTGACATTTTATAGAATGGT GCGTCATATTGTACATCGGATTTGTCCATCCACAAAAACGGTGAAGTACA TATCTGGGACAAAGGTTTTGACGATGAAGGGAACCAGGTTATTTTCATAT ATCTTCACTTGCTAGTGTTCCAGTTCTGCCAAGATTGTGTGAAAGAGAAT CTTGACAATGTGCTCACTTGCTCAGGTTTGGGGAACCAAGGTTGGCCCTT ACGAGTTCAAGCCTGCCCCCAAATCCAAATATGACGACATGTTCTCGCCA TTAAATTTCTCCGCCCCTTTGTCACTAGAGAAGAAGTTGGATAAAGCATA TGTAATCGATGACCAGTAG
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Coding sequence (CDS) from alignment at Sh_009H11:84920..85838-

>Sh_009H11_t000100 ID=Sh_009H11_t000100|Name=Sh_009H11_t000100|organism=R570 Sugarcane cultivar|type=CDS|length=474bp|location=Sequence derived from alignment at Sh_009H11:84920..85838- (R570 Sugarcane cultivar)
ATGACTGTTGAGGACCTAGTTCCTGCATGGAAAGAGCATGGTCTCCCATT
TTTTATGCGACATAACCACTTAGTTTCAATGCATTCTATAAGCTGTATTC
ACATCTACACTGTTTACCTTTGGTGTTTAGGATATCGCAGAGCATCTGAC
CACCATACACTTGTCACGGTGTGGCCTGTGGAAAACGTTGCTTATATGAA
AGGATCTACCCCACCTGAAGGTTTTCCCAACAACTGGAATGGTGCGTCAT
ATTGTACATCGGATTTGTCCATCCACAAAAACGGTGAAGTACATATCTGG
GACAAAGGTTTTGACGATGAAGGGAACCAGGTTTGGGGAACCAAGGTTGG
CCCTTACGAGTTCAAGCCTGCCCCCAAATCCAAATATGACGACATGTTCT
CGCCATTAAATTTCTCCGCCCCTTTGTCACTAGAGAAGAAGTTGGATAAA
GCATATGTAATCGATGACCAGTAG
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