Sh_009I06_t000010

Overview
NameSh_009I06_t000010
Unique NameSh_009I06_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1056
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009I06contigSh_009I06:1..1153
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteBTB/POZ and MATH domain-containing protein 2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009I06_g000010Sh_009I06_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009I06_p000010Sh_009I06_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009I06_t000010 ID=Sh_009I06_t000010|Name=Sh_009I06_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1056bp
ATGGCTCCTGTCATCCCGACCTGCCGGCGCATCGCTAGCGATGATAGGGT
CCCCTCGGTCTCCGCCTCCGCTATCGTCGGCGGCTCCGCGAGCGGCTACC
ACGTGCTCGGGATCAGGGGCTACTCGAGCATCAAAGTCGCCTTCCCCAAT
GGAAAACATTTCGATTCTCTCCCTTTCCGCGTCGCGGGGCACACATGGTT
TATCCGGTACTTCCCCAACGGCGACAGCCCGGAGACCGCTGACCACATCT
CCCTCTACCTCCACCTCAAGGATCAGCTCGAGCTCGGGGACGAATTAATG
GTGCAGTTCATGATCAGCTTCATGGATCAGGTGGAGAAGCAGAAGCCGGC
ATTCGTCGGCAGCCTCGAGGCGCGTAGATTCGGCACCAACGGATGGTGGG
GATATAAGGAATTCATCAGGAAAGAGAGCTTGGAGCAGTCGGAGCGCCTC
AAGGACGACTGCTTCTCGATCAGGTGCGACATAATCGTCACCGGCCTGCC
ACGCGCGGAGGCTGCCGCAGCTTTCGCCGTTGCGGTGCCGCCTCTCGAGT
TGCCACAGCATTTCAGGGCCCTCCTCCTAGGAGGAAAGGGTGCCGATGTG
AGATTTCTTGTCGGGGACAAGACATTTGCCGCGCACCGGTGTGTGCTTGC
TGCACGGTCGCCGGTCTTCGATGCGCTGCTCTTTGGCCCGATGAAGGAAG
GCACCTCCACAGAGAACTGCATACGGATTGATGATATGGCAGCTCAGGTG
TTCCGGACCTTGCTGCATTTCATTTACACAGACTCGCTGCCAGAGACAAT
AGAGCAAGATAACGGTGGAGCCACGATGGCGCAGCATTTGCTAGAAGCTG
CAGACAGATACGACTTGCAGAGGCTTAAGCTGATATGTGAGGATAGGCTA
TGCCAGCAAATTGATGTGAGCACGGTGGCGACCACACTTGCATTGGCTGA
GCAGCACCACTGTCAAGCGCTTAAGGATGAGGTCAGCGCGACCGATGGAT
TCCAGCATCTGGTGAAAACCTGTCCTTCTGCTTTGTTTCAGTTGATGTCC
AAGCTT
back to top

protein sequence of Sh_009I06_p000010

>Sh_009I06_p000010 ID=Sh_009I06_p000010|Name=Sh_009I06_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=352bp
MAPVIPTCRRIASDDRVPSVSASAIVGGSASGYHVLGIRGYSSIKVAFPN
GKHFDSLPFRVAGHTWFIRYFPNGDSPETADHISLYLHLKDQLELGDELM
VQFMISFMDQVEKQKPAFVGSLEARRFGTNGWWGYKEFIRKESLEQSERL
KDDCFSIRCDIIVTGLPRAEAAAAFAVAVPPLELPQHFRALLLGGKGADV
RFLVGDKTFAAHRCVLAARSPVFDALLFGPMKEGTSTENCIRIDDMAAQV
FRTLLHFIYTDSLPETIEQDNGGATMAQHLLEAADRYDLQRLKLICEDRL
CQQIDVSTVATTLALAEQHHCQALKDEVSATDGFQHLVKTCPSALFQLMS
KL
back to top

mRNA from alignment at Sh_009I06:1..1153-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009I06_t000010 ID=Sh_009I06_t000010|Name=Sh_009I06_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1153bp|location=Sequence derived from alignment at Sh_009I06:1..1153- (R570 Sugarcane cultivar)
GTGCGCCGGTGACACCGCGTTCCACTACCTGCCCCGCCGCTCCACCCCAC CCCACCTCAAGGCTCGAGCGCACCACTACCTCGTCGGCACCTAAGTAATG GCTCCTGTCATCCCGACCTGCCGGCGCATCGCTAGCGATGATAGGGTCCC CTCGGTCTCCGCCTCCGCTATCGTCGGCGGCTCCGCGAGCGGCTACCACG TGCTCGGGATCAGGGGCTACTCGAGCATCAAAGTCGCCTTCCCCAATGGA AAACATTTCGATTCTCTCCCTTTCCGCGTCGCGGGGCACACATGGTTTAT CCGGTACTTCCCCAACGGCGACAGCCCGGAGACCGCTGACCACATCTCCC TCTACCTCCACCTCAAGGATCAGCTCGAGCTCGGGGACGAATTAATGGTG CAGTTCATGATCAGCTTCATGGATCAGGTGGAGAAGCAGAAGCCGGCATT CGTCGGCAGCCTCGAGGCGCGTAGATTCGGCACCAACGGATGGTGGGGAT ATAAGGAATTCATCAGGAAAGAGAGCTTGGAGCAGTCGGAGCGCCTCAAG GACGACTGCTTCTCGATCAGGTGCGACATAATCGTCACCGGCCTGCCACG CGCGGAGGCTGCCGCAGCTTTCGCCGTTGCGGTGCCGCCTCTCGAGTTGC CACAGCATTTCAGGGCCCTCCTCCTAGGAGGAAAGGGTGCCGATGTGAGA TTTCTTGTCGGGGACAAGACATTTGCCGCGCACCGGTGTGTGCTTGCTGC ACGGTCGCCGGTCTTCGATGCGCTGCTCTTTGGCCCGATGAAGGAAGGCA CCTCCACAGAGAACTGCATACGGATTGATGATATGGCAGCTCAGGTGTTC CGGACCTTGCTGCATTTCATTTACACAGACTCGCTGCCAGAGACAATAGA GCAAGATAACGGTGGAGCCACGATGGCGCAGCATTTGCTAGAAGCTGCAG ACAGATACGACTTGCAGAGGCTTAAGCTGATATGTGAGGATAGGCTATGC CAGCAAATTGATGTGAGCACGGTGGCGACCACACTTGCATTGGCTGAGCA GCACCACTGTCAAGCGCTTAAGGATGAGGTCAGCGCGACCGATGGATTCC AGCATCTGGTGAAAACCTGTCCTTCTGCTTTGTTTCAGTTGATGTCCAAG CTT
back to top

Coding sequence (CDS) from alignment at Sh_009I06:1..1153-

>Sh_009I06_t000010 ID=Sh_009I06_t000010|Name=Sh_009I06_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=1056bp|location=Sequence derived from alignment at Sh_009I06:1..1153- (R570 Sugarcane cultivar)
ATGGCTCCTGTCATCCCGACCTGCCGGCGCATCGCTAGCGATGATAGGGT
CCCCTCGGTCTCCGCCTCCGCTATCGTCGGCGGCTCCGCGAGCGGCTACC
ACGTGCTCGGGATCAGGGGCTACTCGAGCATCAAAGTCGCCTTCCCCAAT
GGAAAACATTTCGATTCTCTCCCTTTCCGCGTCGCGGGGCACACATGGTT
TATCCGGTACTTCCCCAACGGCGACAGCCCGGAGACCGCTGACCACATCT
CCCTCTACCTCCACCTCAAGGATCAGCTCGAGCTCGGGGACGAATTAATG
GTGCAGTTCATGATCAGCTTCATGGATCAGGTGGAGAAGCAGAAGCCGGC
ATTCGTCGGCAGCCTCGAGGCGCGTAGATTCGGCACCAACGGATGGTGGG
GATATAAGGAATTCATCAGGAAAGAGAGCTTGGAGCAGTCGGAGCGCCTC
AAGGACGACTGCTTCTCGATCAGGTGCGACATAATCGTCACCGGCCTGCC
ACGCGCGGAGGCTGCCGCAGCTTTCGCCGTTGCGGTGCCGCCTCTCGAGT
TGCCACAGCATTTCAGGGCCCTCCTCCTAGGAGGAAAGGGTGCCGATGTG
AGATTTCTTGTCGGGGACAAGACATTTGCCGCGCACCGGTGTGTGCTTGC
TGCACGGTCGCCGGTCTTCGATGCGCTGCTCTTTGGCCCGATGAAGGAAG
GCACCTCCACAGAGAACTGCATACGGATTGATGATATGGCAGCTCAGGTG
TTCCGGACCTTGCTGCATTTCATTTACACAGACTCGCTGCCAGAGACAAT
AGAGCAAGATAACGGTGGAGCCACGATGGCGCAGCATTTGCTAGAAGCTG
CAGACAGATACGACTTGCAGAGGCTTAAGCTGATATGTGAGGATAGGCTA
TGCCAGCAAATTGATGTGAGCACGGTGGCGACCACACTTGCATTGGCTGA
GCAGCACCACTGTCAAGCGCTTAAGGATGAGGTCAGCGCGACCGATGGAT
TCCAGCATCTGGTGAAAACCTGTCCTTCTGCTTTGTTTCAGTTGATGTCC
AAGCTT
back to top