Sh_009J10_t000020

Overview
NameSh_009J10_t000020
Unique NameSh_009J10_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length2115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009J10contigSh_009J10:29168..31735
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to OSJNBa0083N12.1 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009J10_g000020Sh_009J10_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009J10_p000020Sh_009J10_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009J10_t000020 ID=Sh_009J10_t000020|Name=Sh_009J10_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2115bp
ATGCTTCTCCCTGCTTTTCTCCTGCAACCGCTCCTCCTCGCATGCTTCTT
TTCATCCTTTGTTCATCCTATGGAACCAAACACATCCAGATCATGGTGCG
CCAACATGTCCATTCCTTATCCTTTTGGTATTGCTGGCGATGGCGGGAGC
CCCTTCCTGTCCCAAGGCTTCCAGATATCATGTCGCTCCCGTCGATCTGC
TGCCTTGTCTGGACCAGCGCTGCCCATTGGAAACAGAGTGTTTGGGATTC
TTGACATCTCATTGCTGGATGGTTTTGTGACCATAGCAGCTAATGCCAGT
TCTCAGCAGTGCAAGGGGAACTCTAGCTTTAACCTTGAGGGTACCATCTT
CACATACTCAGATACAAGAAACAAGTTCACAGCTCTGGGTTGTAACGTGG
TGGCCATGCTGTTGAATGGCAGTAGTGGGTATAGCGGTGGTTGTGCTTCC
TTTTGCTCTAGCAAAGATAATATCGTCAATGGTTCGTGCTCTGGTGTGGC
TTGCTGCCAAGCTCCGGTGCCGAAAGGGCTAACGAAGATGGAGCTAGAAT
TCAATATTATATCCAACAAGTACAACAGCACTCCACCATGCGGCGAGGCC
TTCATCGTGGAGCAGAACTCCTGTGAAGAGGCACAACAGTCCACATCGTA
TGCCTGCCGGGAGAATACCTACTGCTACAACTCACCAAATGGAATTGGTT
ACCGCTGCAATTGCTCCGACGGATTTCAGGGGAACCCATACTTGCCAGGG
CCTGGTGGTGGATGCCAAGATATTGATGAATGCACCACCAGAAATCCGTG
CACATATAAGTGCGTCAACACAAAAGGTGGTTTCCACTGCAGGTGCCCCG
CAGGGATGAGCGGCGATGGCTTCAAAGAGGGAAGTGGTTGCAATGGAGTA
GGCACGCTAACAATTGCCGGAGTCACAGGACTAGCTCTGCTAGTGCTTCT
CTTTATTCTTGGTTTCTGGACCCATTGGCTTGTTAAGAAGAGGAAACTTG
CAAAGACAAGACAGAGATACTTTATGCAGAATGGTGGCTTGTTGCTGAAG
CAGCAGATGTTTTCTGAGAGGGCACCGCTGCATATATTCACCTCTAGTGA
GCTTGACAAAGCAACCAGTAACTTCAGTGATGACAATATTATTGGCAGAG
GGGGATTTGGGACTGTGTACAAAGGCATACTATCCAACCAAATGGTTGTG
GCAATCAAGAAGGCACAACGAGTTGATCAGACCCAGATGGAACAATTCGT
CAATGAGTTGATCATTCTTTCACAAGCGAACCACAAACATGTGGTCCAGC
TATTAGGATGTTGTCTTGAGACTGAAGTTCCTTTATTGGTTTATGAATTC
ATTACCAATGGGGCCCTTTTTCATCATCTTCACAATACATTAGCCCCGAT
GTCATGGGAGAACCGTCTAAGCATTGCAGTTGAAACTGCATCGGCACTTG
CATACTTGCATTTAGCTACAAAGATGCCAATAATTCACAGAGATGTCAAG
TCATCAAACATACTTCTTGATGAGAATTTCACCGCAAAGGTGTCTGATTT
TGGTGCCTCAAGGCCAATACCCTACAATCAGACCCATGTGACAACATTAG
TGCAAGGGACACTAGGGTACCTTGACCCTGAGTACTTCCAGACAAGCCAA
TTGACTGAAAAGAGTGATGTGTACAGTTTCGGTGTGGTACTCATCGAGCT
ACTAACAAGGAAGAAACCTATTATGGATGGTATGATGGAAGACATGAGAA
GCCTAGCCCTGCAATTTAGTATGTTATTCCATCAAAATAAGTTGTTGGAG
ATTGTTGATCCTACAGTATCCGAAGAGGCTGGAATGCGACATATTGAAAC
GGTAGCAAAGTTGGCGTTACGATGCATAAAGTTGAAAGGTGAAGAAAGAC
CAAGGATGATAGAGGTTGCAATTGAACTTGAAGCACTGAGAAGGTTGATG
AAACAACATTTTATCATGAAGAGCGAGTCTTTGCTTCACGAGTCATGGTG
CCATGAAGAGATGAGCATTGATGCACCATCGAATTTTTGCCTTGGCGATG
ATGGCATTCTTGGAGATGAAAGCCAAGAGATCATTCTACTTCCATCCAAT
AGTCTCTCATCCTAA
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protein sequence of Sh_009J10_p000020

>Sh_009J10_p000020 ID=Sh_009J10_p000020|Name=Sh_009J10_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=705bp
MLLPAFLLQPLLLACFFSSFVHPMEPNTSRSWCANMSIPYPFGIAGDGGS
PFLSQGFQISCRSRRSAALSGPALPIGNRVFGILDISLLDGFVTIAANAS
SQQCKGNSSFNLEGTIFTYSDTRNKFTALGCNVVAMLLNGSSGYSGGCAS
FCSSKDNIVNGSCSGVACCQAPVPKGLTKMELEFNIISNKYNSTPPCGEA
FIVEQNSCEEAQQSTSYACRENTYCYNSPNGIGYRCNCSDGFQGNPYLPG
PGGGCQDIDECTTRNPCTYKCVNTKGGFHCRCPAGMSGDGFKEGSGCNGV
GTLTIAGVTGLALLVLLFILGFWTHWLVKKRKLAKTRQRYFMQNGGLLLK
QQMFSERAPLHIFTSSELDKATSNFSDDNIIGRGGFGTVYKGILSNQMVV
AIKKAQRVDQTQMEQFVNELIILSQANHKHVVQLLGCCLETEVPLLVYEF
ITNGALFHHLHNTLAPMSWENRLSIAVETASALAYLHLATKMPIIHRDVK
SSNILLDENFTAKVSDFGASRPIPYNQTHVTTLVQGTLGYLDPEYFQTSQ
LTEKSDVYSFGVVLIELLTRKKPIMDGMMEDMRSLALQFSMLFHQNKLLE
IVDPTVSEEAGMRHIETVAKLALRCIKLKGEERPRMIEVAIELEALRRLM
KQHFIMKSESLLHESWCHEEMSIDAPSNFCLGDDGILGDESQEIILLPSN
SLSS*
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mRNA from alignment at Sh_009J10:29168..31735+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009J10_t000020 ID=Sh_009J10_t000020|Name=Sh_009J10_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2568bp|location=Sequence derived from alignment at Sh_009J10:29168..31735+ (R570 Sugarcane cultivar)
GGAAATGCTTCTCCCTGCTTTTCTCCTGCAACCGCTCCTCCTCGCATGCT TCTTTTCATCCTTTGTTCATCCTATGGAACCAAACACATCCAGATCATGG TGCGCCAACATGTCCATTCCTTATCCTTTTGGTATTGCTGGCGATGGCGG GAGCCCCTTCCTGTCCCAAGGCTTCCAGATATCATGTCGCTCCCGTCGAT CTGCTGCCTTGTCTGGACCAGCGCTGCCCATTGGAAACAGAGTGTTTGGG ATTCTTGACATCTCATTGCTGGATGGTTTTGTGACCATAGCAGCTAATGC CAGTTCTCAGCAGTGCAAGGGGAACTCTAGCTTTAACCTTGAGGGTACCA TCTTCACATACTCAGATACAAGAAACAAGTTCACAGCTCTGGGTTGTAAC GTGGTGGCCATGCTGTTGAATGGCAGTAGTGGGTATAGCGGTGGTTGTGC TTCCTTTTGCTCTAGCAAAGATAATATCGTCAATGGTTCGTGCTCTGGTG TGGCTTGCTGCCAAGCTCCGGTGCCGAAAGGGCTAACGAAGATGGAGCTA GAATTCAATATTATATCCAACAAGTACAACAGCACTCCACCATGCGGCGA GGCCTTCATCGTGGAGCAGAACTCGTATGTGTTTTCAAGTCTTGACTTGG ATAACAAGCCTCAATACCGACCTGTTGTGCTTGAGTGGTCTATACATGGT GGCAGCTGTGAAGAGGCACAACAGTCCACATCGTATGCCTGCCGGGAGAA TACCTACTGCTACAACTCACCAAATGGAATTGGTTACCGCTGCAATTGCT CCGACGGATTTCAGGGGAACCCATACTTGCCAGGGCCTGGTGGTGGATGC CAAGGTACCAAATAAACTCTTGTACATATATGCTTGTAGTACCTGCAAGT AGATTTTAATAATTTGTTTCTTCAACTTTAGATAGCAATCAGAATCCATG TCTGATGTCTGTTTTCTTTTTCACGTGGCTGTCCACTTTTGGCAAGATAT TGATGAATGCACCACCAGAAATCCGTGCACATATAAGTGCGTCAACACAA AAGGTGGTTTCCACTGCAGGTGCCCCGCAGGGATGAGCGGCGATGGCTTC AAAGAGGGAAGTGGTTGCAATGGAGTAGGCACGCTAACAATTGCCGGAGG TAAGTGTTTGAAACCATGCATCAACAAGTGATAGATTATTCAGTCATAAG AATCTTCTGAATTTTATTGCTCCTATATATCTTGCAGTCACAGGACTAGC TCTGCTAGTGCTTCTCTTTATTCTTGGTTTCTGGACCCATTGGCTTGTTA AGAAGAGGAAACTTGCAAAGACAAGACAGAGATACTTTATGCAGAATGGT GGCTTGTTGCTGAAGCAGCAGATGTTTTCTGAGAGGGCACCGCTGCATAT ATTCACCTCTAGTGAGCTTGACAAAGCAACCAGTAACTTCAGTGATGACA ATATTATTGGCAGAGGGGGATTTGGGACTGTGTACAAAGGCATACTATCC AACCAAATGGTTGTGGCAATCAAGAAGGCACAACGAGTTGATCAGACCCA GATGGAACAATTCGTCAATGAGTTGATCATTCTTTCACAAGCGAACCACA AACATGTGGTCCAGCTATTAGGATGTTGTCTTGAGACTGAAGTTCCTTTA TTGGTTTATGAATTCATTACCAATGGGGCCCTTTTTCATCATCTTCACAA TACATTAGCCCCGATGTCATGGGAGAACCGTCTAAGCATTGCAGTTGAAA CTGCATCGGCACTTGCATACTTGCATTTAGCTACAAAGATGCCAATAATT CACAGAGATGTCAAGTCATCAAACATACTTCTTGATGAGAATTTCACCGC AAAGGTGTCTGATTTTGGTGCCTCAAGGCCAATACCCTACAATCAGACCC ATGTGACAACATTAGTGCAAGGGACACTAGGGTACCTTGACCCTGAGTAC TTCCAGACAAGCCAATTGACTGAAAAGAGTGATGTGTACAGTTTCGGTGT GGTACTCATCGAGCTACTAACAAGGAAGAAACCTATTATGGATGGTATGA TGGAAGACATGAGAAGCCTAGCCCTGCAATTTAGTATGTTATTCCATCAA AATAAGTTGTTGGAGATTGTTGATCCTACAGTATCCGAAGAGGCTGGAAT GCGACATATTGAAACGGTAGCAAAGTTGGCGTTACGATGCATAAAGTTGA AAGGTGAAGAAAGACCAAGGATGATAGAGGTTGCAATTGAACTTGAAGCA CTGAGAAGGTTGATGAAACAACATTTTATCATGAAGAGCGAGTCTTTGCT TCACGAGTCATGGTGCCATGAAGAGATGAGCATTGATGCACCATCGAATT TTTGCCTTGGCGATGATGGCATTCTTGGAGATGAAAGCCAAGAGATCATT CTACTTCCATCCAATAGTCTCTCATCCTAACTCAATAACTATCACAAAAA AGAAGGTTTTAGCTGATTCTACCTTCTCAATTGTCAATTCAGTCTTAGTA ATCTCTACGTCTTGTGTTTAGCTTCCAACCTGGTTAATGGAATATTGTTA TACATGTCCTTTTTTTGT
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Coding sequence (CDS) from alignment at Sh_009J10:29168..31735+

>Sh_009J10_t000020 ID=Sh_009J10_t000020|Name=Sh_009J10_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=2115bp|location=Sequence derived from alignment at Sh_009J10:29168..31735+ (R570 Sugarcane cultivar)
ATGCTTCTCCCTGCTTTTCTCCTGCAACCGCTCCTCCTCGCATGCTTCTT
TTCATCCTTTGTTCATCCTATGGAACCAAACACATCCAGATCATGGTGCG
CCAACATGTCCATTCCTTATCCTTTTGGTATTGCTGGCGATGGCGGGAGC
CCCTTCCTGTCCCAAGGCTTCCAGATATCATGTCGCTCCCGTCGATCTGC
TGCCTTGTCTGGACCAGCGCTGCCCATTGGAAACAGAGTGTTTGGGATTC
TTGACATCTCATTGCTGGATGGTTTTGTGACCATAGCAGCTAATGCCAGT
TCTCAGCAGTGCAAGGGGAACTCTAGCTTTAACCTTGAGGGTACCATCTT
CACATACTCAGATACAAGAAACAAGTTCACAGCTCTGGGTTGTAACGTGG
TGGCCATGCTGTTGAATGGCAGTAGTGGGTATAGCGGTGGTTGTGCTTCC
TTTTGCTCTAGCAAAGATAATATCGTCAATGGTTCGTGCTCTGGTGTGGC
TTGCTGCCAAGCTCCGGTGCCGAAAGGGCTAACGAAGATGGAGCTAGAAT
TCAATATTATATCCAACAAGTACAACAGCACTCCACCATGCGGCGAGGCC
TTCATCGTGGAGCAGAACTCCTGTGAAGAGGCACAACAGTCCACATCGTA
TGCCTGCCGGGAGAATACCTACTGCTACAACTCACCAAATGGAATTGGTT
ACCGCTGCAATTGCTCCGACGGATTTCAGGGGAACCCATACTTGCCAGGG
CCTGGTGGTGGATGCCAAGATATTGATGAATGCACCACCAGAAATCCGTG
CACATATAAGTGCGTCAACACAAAAGGTGGTTTCCACTGCAGGTGCCCCG
CAGGGATGAGCGGCGATGGCTTCAAAGAGGGAAGTGGTTGCAATGGAGTA
GGCACGCTAACAATTGCCGGAGTCACAGGACTAGCTCTGCTAGTGCTTCT
CTTTATTCTTGGTTTCTGGACCCATTGGCTTGTTAAGAAGAGGAAACTTG
CAAAGACAAGACAGAGATACTTTATGCAGAATGGTGGCTTGTTGCTGAAG
CAGCAGATGTTTTCTGAGAGGGCACCGCTGCATATATTCACCTCTAGTGA
GCTTGACAAAGCAACCAGTAACTTCAGTGATGACAATATTATTGGCAGAG
GGGGATTTGGGACTGTGTACAAAGGCATACTATCCAACCAAATGGTTGTG
GCAATCAAGAAGGCACAACGAGTTGATCAGACCCAGATGGAACAATTCGT
CAATGAGTTGATCATTCTTTCACAAGCGAACCACAAACATGTGGTCCAGC
TATTAGGATGTTGTCTTGAGACTGAAGTTCCTTTATTGGTTTATGAATTC
ATTACCAATGGGGCCCTTTTTCATCATCTTCACAATACATTAGCCCCGAT
GTCATGGGAGAACCGTCTAAGCATTGCAGTTGAAACTGCATCGGCACTTG
CATACTTGCATTTAGCTACAAAGATGCCAATAATTCACAGAGATGTCAAG
TCATCAAACATACTTCTTGATGAGAATTTCACCGCAAAGGTGTCTGATTT
TGGTGCCTCAAGGCCAATACCCTACAATCAGACCCATGTGACAACATTAG
TGCAAGGGACACTAGGGTACCTTGACCCTGAGTACTTCCAGACAAGCCAA
TTGACTGAAAAGAGTGATGTGTACAGTTTCGGTGTGGTACTCATCGAGCT
ACTAACAAGGAAGAAACCTATTATGGATGGTATGATGGAAGACATGAGAA
GCCTAGCCCTGCAATTTAGTATGTTATTCCATCAAAATAAGTTGTTGGAG
ATTGTTGATCCTACAGTATCCGAAGAGGCTGGAATGCGACATATTGAAAC
GGTAGCAAAGTTGGCGTTACGATGCATAAAGTTGAAAGGTGAAGAAAGAC
CAAGGATGATAGAGGTTGCAATTGAACTTGAAGCACTGAGAAGGTTGATG
AAACAACATTTTATCATGAAGAGCGAGTCTTTGCTTCACGAGTCATGGTG
CCATGAAGAGATGAGCATTGATGCACCATCGAATTTTTGCCTTGGCGATG
ATGGCATTCTTGGAGATGAAAGCCAAGAGATCATTCTACTTCCATCCAAT
AGTCTCTCATCCTAA
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