Sh_009J10_t000050

Overview
NameSh_009J10_t000050
Unique NameSh_009J10_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length699
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009J10contigSh_009J10:90374..92808
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteChlorophyll(ide) b reductase NOL, chloroplastic
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009J10_g000050Sh_009J10_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009J10_p000050Sh_009J10_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009J10_t000050 ID=Sh_009J10_t000050|Name=Sh_009J10_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=699bp
ATGGCTGCAACTGCCACCGTCGCCGCCCACCTCCCGCTGCGGGGCCCCGC
GCGCGCTCCGTCCCGGCCATCCGTCGCCGCAGCAACCCGGCTCCGCGGCC
GGCAGGGGCGGCGCGGCCTGGCGGCGACAGGCGGGAGGGGACTTGCCCGG
GTTCGGGCGGAGGCTTTTTCCGGTGGTGGAGGCGTGGGGCGGAGGGACCC
CATGGTGCCGCCTTACAATGTCCTCATCACCGGCTCCACCAAAGGTTTAG
GATACGCGTTGGCAAGGAAATTTCTGGAGGCTGGTGATAATGTTATAATC
TGCTCGAGATCAGCTCAAAGGGTAGAATCTGTGGTCGGTGACTTGAAGAA
GGAGTACGGAGAGCAACATGTGTGGGGAACTGTCTGTGATGTTAGAGACG
GAAAGGATGTAAAGGCACTTGTGGAATTTGCACGTAACAAACTTAAGCAT
ATTGATATATGGATCAACAATGCTGGATCAAATGCATATACATACAAACC
ACTTGTGGAGACCTCTGACGAGGCTCTCATGGAAATCATCACCACTAACA
CCCTTGGACTGATGATATGTTGTCGTGAGGCAATAAATATGATGAGGAAC
CAACCTCGAGGTGGTCACATATTCAACCTTGATGGTGCTGGTTCTGATGG
AAGGCCAACTCCAAGGTATGTGTTTCCAAATTCCAAATATCTAGTGTAA
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protein sequence of Sh_009J10_p000050

>Sh_009J10_p000050 ID=Sh_009J10_p000050|Name=Sh_009J10_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=233bp
MAATATVAAHLPLRGPARAPSRPSVAAATRLRGRQGRRGLAATGGRGLAR
VRAEAFSGGGGVGRRDPMVPPYNVLITGSTKGLGYALARKFLEAGDNVII
CSRSAQRVESVVGDLKKEYGEQHVWGTVCDVRDGKDVKALVEFARNKLKH
IDIWINNAGSNAYTYKPLVETSDEALMEIITTNTLGLMICCREAINMMRN
QPRGGHIFNLDGAGSDGRPTPRYVFPNSKYLV*
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mRNA from alignment at Sh_009J10:90374..92808+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009J10_t000050 ID=Sh_009J10_t000050|Name=Sh_009J10_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=2435bp|location=Sequence derived from alignment at Sh_009J10:90374..92808+ (R570 Sugarcane cultivar)
ATGGCTGCAACTGCCACCGTCGCCGCCCACCTCCCGCTGCGGGGCCCCGC GCGCGCTCCGTCCCGGCCATCCGTCGCCGCAGCAACCCGGCTCCGCGGCC GGCAGGGGCGGCGCGGCCTGGCGGCGACAGGCGGGAGGGGACTTGCCCGG GTTCGGGCGGAGGCTTTTTCCGGTGGTGGAGGCGTGGGGCGGAGGGACCC CATGGTGCCGCCTTACAATGTCCTCATCACCGGCTCCACCAAAGGTATGG ACTATCGAGCAGCTCGATGCTGGCTAATTTTCGTTTAGGCCCCATTATTT ATTGAGTTTGGCATGAAAGGCGGGGAAGGCCCCACATTTCTGTTGCGTTC CTGCGTCTGCGTTGAGACGCAATGTGTGTATTTCGAACTTTCGAAGAGAA ACCGATAACTACTGGGGTATCTGTATCGATCTTTCACTCGGTCAATGGAA GCTTGAGCTTGGAACTTTGTATCGATTGAGTGCAGGCTCTCTTTGCAGGA ACACAAACCTTAGACACTTGTACTAGGAACCAAAGAAAAAAGAACTACAG GCATATCAAATTTACTTCCTCTTGTAGACACTGGCTTCAAACAAAGAAAA CGGCACGCATATGAGCACACGATTTGTACCTTCAACATCGATCCTACTCA ACAGTTTTCTGTATTCTTCCGCAGGTTTAGGATACGCGTTGGCAAGGAAA TTTCTGGAGGCTGGTGATAATGTTATAATCTGCTCGAGATCAGGTAATAT AAGGAGCTGTTCGTTGGTATTAGCATGTTATGCACTGAAATGCACATTTA ATGGTCTAGCATGCTTTTACAGTTTGCAAACTGTTCTGCATAATAGCCCA CCTCCTTTTTTTCTCTCTCTTTTCCATTTTGATGACAGAATGATTTATAG TTACTTTCTGTGGGAGTGGGATGTGATCCATCTGTTGCCATTTCACATTC CCTGCACTTTTCTGGTTTTGTCTCACGAAAGGTTCTCAATGTTGGTGCTA GTTCTTTTAGTCAATGATCTGTCAAAGAAGCCATGAATAATTTTAAGTCA TTATGACTAACTGAATGTCATTAAGCAACTTCTAAAAAAAATAGGATGAA AAAGACAACATGCAATAAATTACAATTGATACCAGTTTAGTCTTTTCCTT GACATGCAGTCTATCCTCTACAGCTCAAAGGGTAGAATCTGTGGTCGGTG ACTTGAAGAAGGAGTACGGAGAGCAACATGTGTGGGTACCTACCGCTGAG CTGCTCGGTTCTTATTTTTTTCATTAATTCGTTTATTCATGAATTGTGTT CTCTTCTTGGATGTGACATAGAGTTGCACCTTTTGCTTCTTACTGGTGAA TTGTTGCTATTTTATTGTCACAGGGAACTGTCTGTGATGTTAGAGACGGA AAGGATGTAAAGGCACTTGTGGAATTTGCACGTAACAAACTTAAGCATAT TGATATATGGGTATGCATATTATTTCTTCCCTCACAAAATAACTGCATGT GCATTAATCTTCACAGTTGTTCTTTCTGGTATAGAAACATGGAACCACTT GCAATGAAATGATACTGATGTTTACTGCATAATTTCTGCCAGACTTGAAA CATTTCTTAATCAGGTGCATGAGATATTAAACATGACTGTGGCTTGTTTG TGGCATACCTCTGCCCTAGGCACATCTTTCAGTTTCCTCCTTGATTGTTC TAACTTCATTTTTAAAAGGGAAAAAAATAAAATGAACTCGGCTCCTCTTG GACCAGTTTAGGTTTGTCTGAAACTCTGAATATCAGTACAAATATGGTCT TTTTTTATATTCTTGTTTTGTGGTGCAGATCAACAATGCTGGATCAAATG CATATACATACAAACCACTTGTGGAGACCTCTGACGAGGCTCTCATGTAA GTTTTGTCCTATTTGAGGAAGCTTGGCAAATACACTTCTATCAGTGCTGT TAATATCAATGATTAATTGGCCCTTTTCTCTGATTTACTAGGGAAATCAT CACCACTAACACCCTTGGACTGATGATATGTTGTCGTGAGGTATTAAACT ATTAATCACGCTAAGTATTAGCTTTCTTACTTCCAGTATGATGACCATGA ACAATTATTTACTAAACATCGCATGTTTGCCATCTTAGGCAATAAATATG ATGAGGAACCAACCTCGAGGTGGTCACATATTCAACCTTGATGGTGCTGG TTCTGATGGAAGGCCAACTCCAAGGTATGTGTTTCCAAATTCCAAATATC TAGTGTAATGTAATGTGGACACAGGCTGAGGAATATGCTACTACATGATT TTATCTTCCTTTGAATTCACAAATTATACGATGCTGTGGAGTTTTGTGCA GTGCATAATATTGTCTTGATTTTAAGTGATGGCAGGATCAGAACTCTTAT CATCCCTCTCCATATGGGTGTATATTGTAATTGAC
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Coding sequence (CDS) from alignment at Sh_009J10:90374..92808+

>Sh_009J10_t000050 ID=Sh_009J10_t000050|Name=Sh_009J10_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=699bp|location=Sequence derived from alignment at Sh_009J10:90374..92808+ (R570 Sugarcane cultivar)
ATGGCTGCAACTGCCACCGTCGCCGCCCACCTCCCGCTGCGGGGCCCCGC
GCGCGCTCCGTCCCGGCCATCCGTCGCCGCAGCAACCCGGCTCCGCGGCC
GGCAGGGGCGGCGCGGCCTGGCGGCGACAGGCGGGAGGGGACTTGCCCGG
GTTCGGGCGGAGGCTTTTTCCGGTGGTGGAGGCGTGGGGCGGAGGGACCC
CATGGTGCCGCCTTACAATGTCCTCATCACCGGCTCCACCAAAGGTTTAG
GATACGCGTTGGCAAGGAAATTTCTGGAGGCTGGTGATAATGTTATAATC
TGCTCGAGATCAGCTCAAAGGGTAGAATCTGTGGTCGGTGACTTGAAGAA
GGAGTACGGAGAGCAACATGTGTGGGGAACTGTCTGTGATGTTAGAGACG
GAAAGGATGTAAAGGCACTTGTGGAATTTGCACGTAACAAACTTAAGCAT
ATTGATATATGGATCAACAATGCTGGATCAAATGCATATACATACAAACC
ACTTGTGGAGACCTCTGACGAGGCTCTCATGGAAATCATCACCACTAACA
CCCTTGGACTGATGATATGTTGTCGTGAGGCAATAAATATGATGAGGAAC
CAACCTCGAGGTGGTCACATATTCAACCTTGATGGTGCTGGTTCTGATGG
AAGGCCAACTCCAAGGTATGTGTTTCCAAATTCCAAATATCTAGTGTAA
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