Sh_009J10_t000060

Overview
NameSh_009J10_t000060
Unique NameSh_009J10_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_009J10contigSh_009J10:92810..95284
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteChlorophyll(ide) b reductase NOL, chloroplastic
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_009J10_g000060Sh_009J10_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_009J10_p000060Sh_009J10_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_009J10_t000060 ID=Sh_009J10_t000060|Name=Sh_009J10_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=417bp
ATGGTGCAACAAAGCGAAGTGTTGTGCATCTTACGAAGTCACTTCAGAAT
TATCTGTGATTTATCGAAATCAGTTGGTATAGACTATAGACTAGTTGCTG
GAACACCACAGAAGGCTGAATTGCAGATGAATGAAGTGAATAATGTGATG
GTGCACAACCTATCGCCTGGCATGGTCACAACAGATCTTCTTATGTCTGG
TGCAACTACAAAACAAGCAAAATTTTTCATCAATATATTAGCTGAACCTC
CTGATGTGGTTGCCGACTACCTCGTTCCGAATGTCAGAGCAATCCCTACC
AATCAATCCATGAAGCCAACCTACATTCGCTTCCTCACAGGCTTGAAAGC
CTACTCAAGAATTTTTTCTAGACTTGCTTTTGGTGCTCGAAGAAACAAGT
ATGTTACTGAGGATTAG
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protein sequence of Sh_009J10_p000060

>Sh_009J10_p000060 ID=Sh_009J10_p000060|Name=Sh_009J10_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=139bp
MVQQSEVLCILRSHFRIICDLSKSVGIDYRLVAGTPQKAELQMNEVNNVM
VHNLSPGMVTTDLLMSGATTKQAKFFINILAEPPDVVADYLVPNVRAIPT
NQSMKPTYIRFLTGLKAYSRIFSRLAFGARRNKYVTED*
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mRNA from alignment at Sh_009J10:92810..95284+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_009J10_t000060 ID=Sh_009J10_t000060|Name=Sh_009J10_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=2475bp|location=Sequence derived from alignment at Sh_009J10:92810..95284+ (R570 Sugarcane cultivar)
CTGTTTTGACAGACATATGAGCGGATCAGTAGTTTGGATAAGTGAAATTG GTTGTGAACAGAGACAGATAGCAAGCAAGGATAAACAAATTAGATTTTAT GGCTAAGACTACTGTGAAATACTGCTATAGGACTCCAGGTTTTTGTTCTC AGATATATGATCTGAATTTTGACTGATAATAACCAGATTTGCTGCATATG GTGCAACAAAGCGAAGTGTTGTGCATCTTACGAAGTCACTTCAGGTAAAA GACAGCCCTTTTGAGGAACAACCTCAAATTCTTGGTTTTCTTTAGAAATT CCTAGTTACTTATATGGTCATGATGAACATTTGATTTATTATTGCCTCAT AGAACTGTTGATTTACTTGAGACATGAAGACTATAAACTACACTGCAAAT CCATAACAATTATTTTTCAGTGTCCAGAATTATCTGTGATTTATCGAAAT CAGTTGGTATAGACTATAGACTAGTTGCTGGAACACCACAGAAGGTTTTT TTTTAATCTTAAACAGGTAGAGTTTAGCCGCCCCCCCCCCCCCCCCCCCC CGCTGCAGATCGAGTTGAGTTTTCCTAAGTAGACACCACCCACCCACCCC AGACATCAATCCCCATATTATTATTTTGTCATTGTTGACAACAATAGTTA GCTGTAGCTAATAAGAAAAAATAATTTTATTTTAATTGCAGGCTGAATTG CAGATGAATGAAGTGAATAATGTGATGGTGCACAACCTATCGGTATGTAA CCCCATCATTTCTTTTCTTGCCATAAATATTCTAGACATCTAAAAATTAG TCTGAACAGCATTTTAACTTTGTAAGCGACATGGCATGGAGGATAGTAGA TTGATTATGACTTCTGAGAGTGCAAGGTACATGCATATATAGGCAAGGAT GTGGAGGGTTTAGTTTGTAAGTAAGCCATCACCGAATATCCTTGCCTATC ACCAATCACTATCAATCTACCTCGGCGCACATGGTTTCAATGGCCTGCGC AGCATAGCACCCGTGGGCCAATAGGCCTAGCCACAATAAAGGCCTAATCG CCTGTCTAACAGGCATTAACGCACTAAAGTAGTTTAACTAGCTACTTTCT ATTGGCTTTGGGCCATGCATAAATGCATGACTATCAGTTTGTATTCTGCC TCAGTAATCTATAAATAATGTTGAAGGAGCAATCATGCAAATTATATGTA TATCATGTGCAGCCTGGCATGGTCACAACAGATCTTCTTATGTCTGGTGC AACTACAAAACAAGTAAGGATCAGCCCGACTCATTTTCCTTTCGCCATAG TTAAAATAATTCAGGGTTACTAAATTATGAACTTACTGATGCCAGGCAAA ATTTTTCATCAATATATTAGCTGAACCTCCTGATGTGGTAAGAGTTTTAT CATTATCTTGTATTCTGGTGTATTGTGGTTGGCTCTTATTTTACAGTTTC CATGTGTCCAAAGTAGCAATGGCTCATTAATTGTTGTATGCCTGTATCTG TTTTGTTGTGCGCCTGTGTGGAATGTGCAACCGTCTTATTTGAAAATGGA TTTCCTAAGGACTCCTTGACGATTCATTATTAAATGGATCAACTAGACCA TTATCTTTGCTTACATTACAAAAGTTCCAACATGCTAGTGCTTAGTGATA GTGAGTTTAGTCATGCATACATTTATATCTGTTGACCTCTTCCCTAAGGA AGTTGCGGGCATGTGTATAGCCATCCAGTAATTCCGATGTGACGATTGAG GACTGGGGATGCAAAATTCTGACCATTATCATACACAATACTACTTACCT TTATCACATAAAAAATATGTTAACAGATCACTCAATCCTATGTCATTATA ATTATTGATTTTTCTATAACATATACTAAGGAAAATAATAGTCAAAACGA GTTTTGGAGACTGTATTGACTATTGACTGTCTAATGAAGAATTAAATAAA ACCAGAGAGTACGTTTTTAAAATCAGATTTCCACAGTTCAGTTCAGTTGA AGTACCTCACAATGTTTCATGGAGCATAACATGCATGGCTGGTTATGCTG TTTATGCTATATATGAACTGTAGGTTCATTTTTTGGCTTGATTTCTCTGG CTATTCAATTTAGGTAAGACCTACAGTTTTTCTAAGCTTCTGATTGGTAG AAAACTGCGCTGACCTGAGATACTTATTCATGTCTCACACTCACTGTTAT AATAGGTTGCCGACTACCTCGTTCCGAATGTCAGAGCAATCCCTACCAAT CAATCCATGAAGCCAACCTACATTCGCTTCCTCACAGGCTTGAAAGCCTA CTCAAGAATTTTTTCTGTAAGAACTCTCCTGATCATGGGTGCTGTCTTCA ATTATTCTTTGACATCCTGACAACACCATTTCTCCTGCATCTGTAATTCA CCCTCTACGATTTCGCCTGCAGAGACTTGCTTTTGGTGCTCGAAGAAACA AGTATGTTACTGAGGATTAGTTGTC
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Coding sequence (CDS) from alignment at Sh_009J10:92810..95284+

>Sh_009J10_t000060 ID=Sh_009J10_t000060|Name=Sh_009J10_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=417bp|location=Sequence derived from alignment at Sh_009J10:92810..95284+ (R570 Sugarcane cultivar)
ATGGTGCAACAAAGCGAAGTGTTGTGCATCTTACGAAGTCACTTCAGAAT
TATCTGTGATTTATCGAAATCAGTTGGTATAGACTATAGACTAGTTGCTG
GAACACCACAGAAGGCTGAATTGCAGATGAATGAAGTGAATAATGTGATG
GTGCACAACCTATCGCCTGGCATGGTCACAACAGATCTTCTTATGTCTGG
TGCAACTACAAAACAAGCAAAATTTTTCATCAATATATTAGCTGAACCTC
CTGATGTGGTTGCCGACTACCTCGTTCCGAATGTCAGAGCAATCCCTACC
AATCAATCCATGAAGCCAACCTACATTCGCTTCCTCACAGGCTTGAAAGC
CTACTCAAGAATTTTTTCTAGACTTGCTTTTGGTGCTCGAAGAAACAAGT
ATGTTACTGAGGATTAG
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