Sh_011E13_contig-1_g000040

Overview
NameSh_011E13_contig-1_g000040
Unique NameSh_011E13_contig-1_g000040
Typegene
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length3439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_011E13_contig-1contigSh_011E13_contig-1:41951..45389
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Streptococcal hemagglutinin-like protein
TypemRNA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
Sh_011E13_contig-1_t000040Sh_011E13_contig-1_t000040R570 Sugarcane cultivarmRNA


Sequences
The following sequences are available for this feature:

gene sequence

>Sh_011E13_contig-1_g000040 ID=Sh_011E13_contig-1_g000040|Name=Sh_011E13_contig-1_g000040|organism=R570 Sugarcane cultivar|type=gene|length=3439bp
ATGGCCGCCGCCACAGCCCCGCCGTCGCAGAGCGCGGACCTGATGCCGCC
GCCGCCGCCCCCTCCGCCCGTCCCGCCGCCGACTGCGCCCCGTCCGCGCC
GCCGCGCAAGGGAAGTCAGCTCCCGGTACCTCTCAACGCCAGTCCCCTCG
ACCCCGCGCCTCTCTACCGCCTCCGCGGCCTCCTCCACGCGGTCGCGCTC
CCCGACGCCGTCGCCTCGTGGACGGCAGCGGGCGGCCACGCCCTTCGCCA
ACGAGAACCACCCGCCCCCGCCGCCGCCGCCCACGGGCACCGTCGCGCGC
CGGCGGGCTGTCCAGAAGCTTTTCGAGGAAACCGGGGCCGGCAATCTGCG
CGCATCGGTGGGCTCCAACTCCTCCGCCGTGTCCGCAGCTACTCCGCGGC
AGCTCCCGCGCTCCACCAGCGGGCCGGCCGCGCCCACCGCGCGGAGGGGG
TACCCGCGCCTTCCGACGCCCGCGCGTGCTGGCTCCTGCCCAGCCTCCGC
CGCGGTGGAATCCGACACCGCCTCTTGCTGCTCTTCGTCTGATACGTCGT
CCACGGCCACTGACTTGTCTGAGGCCGATCGGGCGCTCGGGATGGCCCCA
GCCTTGTCGTGCGAGAGCCCGCCGCTGCTCGGCCCAGCGTCCTGCCGCGG
GGGACGCCTCTCGTCAGAGCTCCGCTCGTCGGTGCCGGAGTCGGGCGGGT
CCTCGCGGGCGTCCAACCCACTGTGCTACCGCTCGCTCAACTCGGCACTG
TCGATCTCAACGGCGATGGCTGGGAAGCTGACGGCGGCAGGGAGGCCACC
ACAGCCGCAAGGGCCGAAGGCAGCTGATCTGAAGAGGACGGCCATCGTGG
GGGGCAGGAAGGTCGCGGGGAAGCAGGAAGACGTGCATCAGCTGCGGCTG
ATGGACAATTCGTACCTCCAGTACAGGTTCCTCAACGCCCGGGCTGAGGC
AGCAGGCAAGGCCAAGGCGGCGGCTGCAGAGGTGAGGGGCTGTTAATGCA
TCGGGCCAGCCGTCAGTGGGGGTGGCTATCTTGTTCTGGTTGATTGATGA
AGACATCGAATTTAGGTCCTGACGACGTTTTTTTTTTTGGTGCAAAGAAA
TCCTTGTACGGGCTCGAGGAGAGGATTGCCAGCCTCAGGGTATCTGTTGC
TGAGAAGAGGGCAGAGATGGAGAGGATGAAAAGGGAGCATACATTGAGTT
CAGTAGTAAATGCGCAGGTAAGGCGAAGCTGTGATTTTCTGAATTTTGAA
TTGTTGTCGTGTTCAGTGTGCATTTCTTCATAATGGGTGCTAACCAAATT
GGTTGATTGTTGATCTAAGCTACCTAAATTCTTCAATCAGATAAATTATA
GGGGATGTTGGGTGTCCATTTCATGTCAAGAGAGTTAGACACTGATGTGG
GGAACCTCGCTCAGAATCGCTCTTCACTTAAACCAAAAAAGTAGAGACTT
TGAAGAATGTCACTAAATGGATATATTTGACTAATATATCAACTGAATTC
AGAAGTAGAACAACATTATTTAAATCCAGAATAGAGTTAAGTGTCCAGAA
TTAAATCCAGTTTTCCCATTCCGAAGTTTGTTTTTCAAAAAAAAAAAGAA
AGAAAAGAAGATATGTACTATACAGTTTGTGTGGTACTCTCCTTTTTTTT
GTTGTCTGTATAAAATAGACAGAATATATAGGTGAAGCTCTTCAAAGCAA
TGTATGTTTTGATAGTATGAGTTTATTTGTACCAAATCGGGTACCATGCT
TTGATTTATATTTGTTTTGTGGGATATATGGTAAAAAGCATGTATATATT
GTCAATGTGAATTTTACATGTAACAGAATAGGGTTAGGTATTCAGAATTA
AACCATTACATGATTTGTGTGTCACTCTCCTTGTTTGATTTTCTGTATAG
AATATACAAAATATATAGGTGAAGCTCTTGAAAGCTTATGTGTATTGTGA
CACTGAGATTCTTTGTATCAAAGTGGTTATCATGCTTTGATTTATATTTA
TTTGCTTATGATAGGTATATATATATGGTCAATATGAATTTTACATGTAA
CACCTTTCTGTCACGTTACTCGAGAACAGATATGTGAAACTTTTAGGTGT
CATATTTGATTCACTCTAAAAGAGAGACGTGAAACTTTCAGGTGCCATAT
TTGATTCAGTGGGGTGAGATTGAGGGGGGTCATGCAAGCTGCCTTAGAGG
GGCAACAACAGCACTGTCTAACGCCTCGTTACGGCTACCAATCATTGGGA
GTGTAAATGTAAGACTTCAATACTTCATTAGACATCAGTTCTGTTATTCT
GTGCATAAGACCAAATATCATGTTGTTTGATATGCTTGCAGGCCAACTGC
GAGGAACTTACAGAAGTCCTTAAGTCAGCAGCACAACTACTTGAACCGCT
TTCACCTTGCATCGAAAATTTCCTGCCAAAGGTGAGACTACAGGGATTTT
TGAAAAACATATATACCAGAACAGGGTGATGCTTAGCTTTCTTTAGATGC
TTCTGGGACATGTTCAATAACTCAAATCATTAAATATATCCATAAATTCA
CTGTATCAGATGTAGTTTTCGATGAAATATAGTGAGAATATCTAAACCTT
TCAACCTACCACCATATGATTTGCAATTTCTAAGCTATAACTCAAAATCA
GATAGGGTGAAGAAAATAGCAAATTTAATGAAATAGAAACTTAGTGCCTA
GTGTAGTAGTGTTCCTTTTTAATTCATATACCTATCATCGTTTCTTGCCT
TTACTAATGTTGATGAAGTTTGTGTTTAGAAATTTGCAAAGTTTTAGATA
GATTCAGTGGTTGTGGTGAATATGGTGTTCTCATTTGATTTGTTGTACTT
ATTTATTATGCAACAAAAAAATATCTTGTCATGGAAGTACTTATTTATGC
AACAAGAAAATTTATATTGCTATGTAGGTTGAACAAATCGACGATGTGGC
CTCCAATCTGGCCCAGGTTATCGCTACTGAGAGAACCTTGATAGAGGAGT
GCGGTAATCTCCTATACCAAGCACAGAACCTGCAGGTATGGTTCTAAACT
GATAATCATCTCACTTCAGTCAGCATATGCTCTAACTTTGCCACAAAATA
TCCAACTGATGCAATGACAAATTCCAATTGCATAGATGAGGGAGTCCAGC
TTGAGGAGCCAAGTGATGCAACTGAAACAAAATGAAGCAAAGTAATAGAA
GGAAGAGAGGGAAAACACGCCGCTGGGTCGTTTGTTCAACTGAGTGAGCT
AACTGTGCTCCACCGTTGGATGTCCAAGAGCCAAGAGGACGGAAGTTGCC
TGATCATATATACATCACCAAAGGCATAAGTGGGTTCTACGAATTGCTGA
TTCTTTTCCAGTACATACATATGTTATGTAATTTGTTGTGGAAACATTTT
TGCTGTCTAGCTATTGGAAAAACAGATAGAAGCATAGTT
back to top

gene from alignment at Sh_011E13_contig-1:41951..45389+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_011E13_contig-1_g000040 ID=Sh_011E13_contig-1_g000040|Name=Sh_011E13_contig-1_g000040|organism=R570 Sugarcane cultivar|type=gene|length=3439bp|location=Sequence derived from alignment at Sh_011E13_contig-1:41951..45389+ (R570 Sugarcane cultivar)
ATGGCCGCCGCCACAGCCCCGCCGTCGCAGAGCGCGGACCTGATGCCGCC GCCGCCGCCCCCTCCGCCCGTCCCGCCGCCGACTGCGCCCCGTCCGCGCC GCCGCGCAAGGGAAGTCAGCTCCCGGTACCTCTCAACGCCAGTCCCCTCG ACCCCGCGCCTCTCTACCGCCTCCGCGGCCTCCTCCACGCGGTCGCGCTC CCCGACGCCGTCGCCTCGTGGACGGCAGCGGGCGGCCACGCCCTTCGCCA ACGAGAACCACCCGCCCCCGCCGCCGCCGCCCACGGGCACCGTCGCGCGC CGGCGGGCTGTCCAGAAGCTTTTCGAGGAAACCGGGGCCGGCAATCTGCG CGCATCGGTGGGCTCCAACTCCTCCGCCGTGTCCGCAGCTACTCCGCGGC AGCTCCCGCGCTCCACCAGCGGGCCGGCCGCGCCCACCGCGCGGAGGGGG TACCCGCGCCTTCCGACGCCCGCGCGTGCTGGCTCCTGCCCAGCCTCCGC CGCGGTGGAATCCGACACCGCCTCTTGCTGCTCTTCGTCTGATACGTCGT CCACGGCCACTGACTTGTCTGAGGCCGATCGGGCGCTCGGGATGGCCCCA GCCTTGTCGTGCGAGAGCCCGCCGCTGCTCGGCCCAGCGTCCTGCCGCGG GGGACGCCTCTCGTCAGAGCTCCGCTCGTCGGTGCCGGAGTCGGGCGGGT CCTCGCGGGCGTCCAACCCACTGTGCTACCGCTCGCTCAACTCGGCACTG TCGATCTCAACGGCGATGGCTGGGAAGCTGACGGCGGCAGGGAGGCCACC ACAGCCGCAAGGGCCGAAGGCAGCTGATCTGAAGAGGACGGCCATCGTGG GGGGCAGGAAGGTCGCGGGGAAGCAGGAAGACGTGCATCAGCTGCGGCTG ATGGACAATTCGTACCTCCAGTACAGGTTCCTCAACGCCCGGGCTGAGGC AGCAGGCAAGGCCAAGGCGGCGGCTGCAGAGGTGAGGGGCTGTTAATGCA TCGGGCCAGCCGTCAGTGGGGGTGGCTATCTTGTTCTGGTTGATTGATGA AGACATCGAATTTAGGTCCTGACGACGTTTTTTTTTTTGGTGCAAAGAAA TCCTTGTACGGGCTCGAGGAGAGGATTGCCAGCCTCAGGGTATCTGTTGC TGAGAAGAGGGCAGAGATGGAGAGGATGAAAAGGGAGCATACATTGAGTT CAGTAGTAAATGCGCAGGTAAGGCGAAGCTGTGATTTTCTGAATTTTGAA TTGTTGTCGTGTTCAGTGTGCATTTCTTCATAATGGGTGCTAACCAAATT GGTTGATTGTTGATCTAAGCTACCTAAATTCTTCAATCAGATAAATTATA GGGGATGTTGGGTGTCCATTTCATGTCAAGAGAGTTAGACACTGATGTGG GGAACCTCGCTCAGAATCGCTCTTCACTTAAACCAAAAAAGTAGAGACTT TGAAGAATGTCACTAAATGGATATATTTGACTAATATATCAACTGAATTC AGAAGTAGAACAACATTATTTAAATCCAGAATAGAGTTAAGTGTCCAGAA TTAAATCCAGTTTTCCCATTCCGAAGTTTGTTTTTCAAAAAAAAAAAGAA AGAAAAGAAGATATGTACTATACAGTTTGTGTGGTACTCTCCTTTTTTTT GTTGTCTGTATAAAATAGACAGAATATATAGGTGAAGCTCTTCAAAGCAA TGTATGTTTTGATAGTATGAGTTTATTTGTACCAAATCGGGTACCATGCT TTGATTTATATTTGTTTTGTGGGATATATGGTAAAAAGCATGTATATATT GTCAATGTGAATTTTACATGTAACAGAATAGGGTTAGGTATTCAGAATTA AACCATTACATGATTTGTGTGTCACTCTCCTTGTTTGATTTTCTGTATAG AATATACAAAATATATAGGTGAAGCTCTTGAAAGCTTATGTGTATTGTGA CACTGAGATTCTTTGTATCAAAGTGGTTATCATGCTTTGATTTATATTTA TTTGCTTATGATAGGTATATATATATGGTCAATATGAATTTTACATGTAA CACCTTTCTGTCACGTTACTCGAGAACAGATATGTGAAACTTTTAGGTGT CATATTTGATTCACTCTAAAAGAGAGACGTGAAACTTTCAGGTGCCATAT TTGATTCAGTGGGGTGAGATTGAGGGGGGTCATGCAAGCTGCCTTAGAGG GGCAACAACAGCACTGTCTAACGCCTCGTTACGGCTACCAATCATTGGGA GTGTAAATGTAAGACTTCAATACTTCATTAGACATCAGTTCTGTTATTCT GTGCATAAGACCAAATATCATGTTGTTTGATATGCTTGCAGGCCAACTGC GAGGAACTTACAGAAGTCCTTAAGTCAGCAGCACAACTACTTGAACCGCT TTCACCTTGCATCGAAAATTTCCTGCCAAAGGTGAGACTACAGGGATTTT TGAAAAACATATATACCAGAACAGGGTGATGCTTAGCTTTCTTTAGATGC TTCTGGGACATGTTCAATAACTCAAATCATTAAATATATCCATAAATTCA CTGTATCAGATGTAGTTTTCGATGAAATATAGTGAGAATATCTAAACCTT TCAACCTACCACCATATGATTTGCAATTTCTAAGCTATAACTCAAAATCA GATAGGGTGAAGAAAATAGCAAATTTAATGAAATAGAAACTTAGTGCCTA GTGTAGTAGTGTTCCTTTTTAATTCATATACCTATCATCGTTTCTTGCCT TTACTAATGTTGATGAAGTTTGTGTTTAGAAATTTGCAAAGTTTTAGATA GATTCAGTGGTTGTGGTGAATATGGTGTTCTCATTTGATTTGTTGTACTT ATTTATTATGCAACAAAAAAATATCTTGTCATGGAAGTACTTATTTATGC AACAAGAAAATTTATATTGCTATGTAGGTTGAACAAATCGACGATGTGGC CTCCAATCTGGCCCAGGTTATCGCTACTGAGAGAACCTTGATAGAGGAGT GCGGTAATCTCCTATACCAAGCACAGAACCTGCAGGTATGGTTCTAAACT GATAATCATCTCACTTCAGTCAGCATATGCTCTAACTTTGCCACAAAATA TCCAACTGATGCAATGACAAATTCCAATTGCATAGATGAGGGAGTCCAGC TTGAGGAGCCAAGTGATGCAACTGAAACAAAATGAAGCAAAGTAATAGAA GGAAGAGAGGGAAAACACGCCGCTGGGTCGTTTGTTCAACTGAGTGAGCT AACTGTGCTCCACCGTTGGATGTCCAAGAGCCAAGAGGACGGAAGTTGCC TGATCATATATACATCACCAAAGGCATAAGTGGGTTCTACGAATTGCTGA TTCTTTTCCAGTACATACATATGTTATGTAATTTGTTGTGGAAACATTTT TGCTGTCTAGCTATTGGAAAAACAGATAGAAGCATAGTT
back to top