Sh_011I19_t000010

Overview
NameSh_011I19_t000010
Unique NameSh_011I19_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_011I19contigSh_011I19:7905..8405
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_011I19_g000010Sh_011I19_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_011I19_p000010Sh_011I19_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_011I19_t000010 ID=Sh_011I19_t000010|Name=Sh_011I19_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=411bp
ATGTCCACCGCAGCTGCTTCTGCTAGCGACACCAGGGCTGCGTCCTCGTC
TATTCGTACTTCGCAAGACAGAGGGAAGGGTCCAGCGGCTGCGGACGATG
TGGATGAGGCACTTCAGTATGACACGACGAGTGGCGACGACAACGACGAC
GAGGACGTTCCCCAGTGGGAGTACACCGGTCACGAGGAGATGGGTGCCTC
ACAGCTATACGGTGCTCCTTTTGGTACACATGGGGTCGACTACACACAGC
AGGAGAACTACACACCAGCCGAGCAACAGGGGCCGTCCTCGACGCAGCAG
TTCGATCGTGGACATAGGCGGCAGCGCGAGAGGCAGCAACAGGACCGCAC
AGACGTTGGCTGGAGAAGCAACGTGGTCCCTACGAATCCGAGGAGGCGAC
GGAGACCGTGA
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protein sequence of Sh_011I19_p000010

>Sh_011I19_p000010 ID=Sh_011I19_p000010|Name=Sh_011I19_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=137bp
MSTAAASASDTRAASSSIRTSQDRGKGPAAADDVDEALQYDTTSGDDNDD
EDVPQWEYTGHEEMGASQLYGAPFGTHGVDYTQQENYTPAEQQGPSSTQQ
FDRGHRRQRERQQQDRTDVGWRSNVVPTNPRRRRRP*
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mRNA from alignment at Sh_011I19:7905..8405+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_011I19_t000010 ID=Sh_011I19_t000010|Name=Sh_011I19_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=501bp|location=Sequence derived from alignment at Sh_011I19:7905..8405+ (R570 Sugarcane cultivar)
ATGTCCACCGCAGCTGCTTCTGCTAGCGACACCAGGGCTGCGTCCTCGTC TATTCGTACTTCGCAAGACAGAGGGAAGGGTCCAGCGGCTGCGGACGATG TGGATGAGGCACTTCAGTATGACACGACGAGTGGCGACGACAACGACGAC GAGGACGTTCCCCAGTGGGAGTACACCGGTCACGAGGAGATGGGTGCCTC ACAGCTATACGGTGCTCCTTTTGGTACACATGGGGTCGACTACACACAGC AGGAGAACTACACACCAGCCGAGCAACAGGTCCCTATGCTTTGCTTTTTC TTTAATTCTACTATTCGTAGCTCAACATTTAGAGTAGCTCATCAGGTTGC TTGCTTGCAGGGGCCGTCCTCGACGCAGCAGTTCGATCGTGGACATAGGC GGCAGCGCGAGAGGCAGCAACAGGACCGCACAGACGTTGGCTGGAGAAGC AACGTGGTCCCTACGAATCCGAGGAGGCGACGGAGACCGTGAGACCCCTA C
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Coding sequence (CDS) from alignment at Sh_011I19:7905..8405+

>Sh_011I19_t000010 ID=Sh_011I19_t000010|Name=Sh_011I19_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=411bp|location=Sequence derived from alignment at Sh_011I19:7905..8405+ (R570 Sugarcane cultivar)
ATGTCCACCGCAGCTGCTTCTGCTAGCGACACCAGGGCTGCGTCCTCGTC
TATTCGTACTTCGCAAGACAGAGGGAAGGGTCCAGCGGCTGCGGACGATG
TGGATGAGGCACTTCAGTATGACACGACGAGTGGCGACGACAACGACGAC
GAGGACGTTCCCCAGTGGGAGTACACCGGTCACGAGGAGATGGGTGCCTC
ACAGCTATACGGTGCTCCTTTTGGTACACATGGGGTCGACTACACACAGC
AGGAGAACTACACACCAGCCGAGCAACAGGGGCCGTCCTCGACGCAGCAG
TTCGATCGTGGACATAGGCGGCAGCGCGAGAGGCAGCAACAGGACCGCAC
AGACGTTGGCTGGAGAAGCAACGTGGTCCCTACGAATCCGAGGAGGCGAC
GGAGACCGTGA
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