Sh_013E15_t000090

Overview
NameSh_013E15_t000090
Unique NameSh_013E15_t000090
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length687
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_013E15contigSh_013E15:101991..102793
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteHAT family dimerisation domain containing protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_013E15_g000090Sh_013E15_g000090R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_013E15_p000090Sh_013E15_p000090R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_013E15_t000090 ID=Sh_013E15_t000090|Name=Sh_013E15_t000090|organism=R570 Sugarcane cultivar|type=mRNA|length=687bp
ATGATACCAATGAGAGGTCGTTCAAAATGTCGTGGAGCCAAATATGTGAC
CTACTACCATCATATTCATCATGGGATTTTCAATGTTGTCCTTGATCAAG
TAATTTTTGAGTTGCACAATCGATTTCCAGAAAGATCAACTCAACTATTG
AGATGTGTTGTTTGTCTTGATCCAACAAATGAGTTTGCCAACTTCGAGAT
AGAGAGATTAGTTGAGCTTGCTAAGATTTATTATGCTGACTTTAGTGATT
ATGAATGTGAAAAGCTAAGGACTGAGCTTGAAAATTTCATAGATGAAGTC
AAACATGATGAAGAATTTTTCTCTTGTATTGATCTTGGTGGCCTTGCTGA
GAAGATGGTTAAAACTGATAGACATACATATTTCCCTTTGGTGTATCGTC
TCATTGAGCTTGCATTGATATTGCCCGTGGCAACAGCAACAGTTGAAAGA
GCATTCTCTGCTATGAATATTATCAAGACCGACAGGAGGAATAAAATGAA
TGATGATTGGATGAATAATAGCATGATATGCTATATTGAGCGGGATTTAT
TTGCATCTATTGAAGATGATAAAATTTTAAAGCGCTTTCAAGGCTTAAGA
AATCGTAAGATAAACTTGCCACCCAAGGTCCCAAGCATTGAGCGTGGCGG
TTCAAGTGGTATTGGTTCAAGTGGTGTGAATTCTTGA
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protein sequence of Sh_013E15_p000090

>Sh_013E15_p000090 ID=Sh_013E15_p000090|Name=Sh_013E15_p000090|organism=R570 Sugarcane cultivar|type=polypeptide|length=229bp
MIPMRGRSKCRGAKYVTYYHHIHHGIFNVVLDQVIFELHNRFPERSTQLL
RCVVCLDPTNEFANFEIERLVELAKIYYADFSDYECEKLRTELENFIDEV
KHDEEFFSCIDLGGLAEKMVKTDRHTYFPLVYRLIELALILPVATATVER
AFSAMNIIKTDRRNKMNDDWMNNSMICYIERDLFASIEDDKILKRFQGLR
NRKINLPPKVPSIERGGSSGIGSSGVNS*
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mRNA from alignment at Sh_013E15:101991..102793-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_013E15_t000090 ID=Sh_013E15_t000090|Name=Sh_013E15_t000090|organism=R570 Sugarcane cultivar|type=mRNA|length=803bp|location=Sequence derived from alignment at Sh_013E15:101991..102793- (R570 Sugarcane cultivar)
ATGATACCAATGAGAGGTCGTTCAAAATGTCGTGGAGCCAAATATGTGAC CTACTACCATCATATTCATCATGGGATTTTCAATGTTGTCCTTGATCAAG TAATTTTTGAGTTGCACAATCGATTTCCAGAAAGATCAACTCAACTATTG AGATGTGTTGTTTGTCTTGATCCAACAAATGAGTTTGCCAACTTCGAGAT AGAGAGATTAGTTGAGCTTGCTAAGATTTATTATGCTGACTTTAGTGATT ATGAATGTGAAAAGCTAAGGACTGAGCTTGAAAATTTCATAGATGAAGTC AAACATGATGAAGAATTTTTCTCTTGTATTGATCTTGGTGGCCTTGCTGA GAAGATGGTTAAAACTGATAGACATACATATTTCCCTTTGGTGTATCGTC TCATTGAGCTTGCATTGATATTGCCCGTGGCAACAGCAACAGTTGAAAGA GCATTCTCTGCTATGAATATTATCAAGACCGACAGGAGGAATAAAATGAA TGATGATTGGATGAATAATAGCATGATATGCTATATTGAGCGGGATTTAT TTGCATCTATTGAAGATGATAAAATTTTAAAGCGCTTTCAAGGCTTAAGA AATCGTAAGATAAACTTGCCACCCAAGGTCCCAAGGTGCGTATTGTTTTA GTTCTTTTCTTTTTGCTTGTTATCTTAATTATTGAAGAAGTGTTTGACAT TTAAAATTTATGTAGCATTGAGCGTGGCGGTTCAAGTGGTATTGGTTCAA GTGGTGTGAATTCTTGAAGATGGAAGATGGAAGGCTCCTTCTATTTGGTA CTT
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Coding sequence (CDS) from alignment at Sh_013E15:101991..102793-

>Sh_013E15_t000090 ID=Sh_013E15_t000090|Name=Sh_013E15_t000090|organism=R570 Sugarcane cultivar|type=CDS|length=687bp|location=Sequence derived from alignment at Sh_013E15:101991..102793- (R570 Sugarcane cultivar)
ATGATACCAATGAGAGGTCGTTCAAAATGTCGTGGAGCCAAATATGTGAC
CTACTACCATCATATTCATCATGGGATTTTCAATGTTGTCCTTGATCAAG
TAATTTTTGAGTTGCACAATCGATTTCCAGAAAGATCAACTCAACTATTG
AGATGTGTTGTTTGTCTTGATCCAACAAATGAGTTTGCCAACTTCGAGAT
AGAGAGATTAGTTGAGCTTGCTAAGATTTATTATGCTGACTTTAGTGATT
ATGAATGTGAAAAGCTAAGGACTGAGCTTGAAAATTTCATAGATGAAGTC
AAACATGATGAAGAATTTTTCTCTTGTATTGATCTTGGTGGCCTTGCTGA
GAAGATGGTTAAAACTGATAGACATACATATTTCCCTTTGGTGTATCGTC
TCATTGAGCTTGCATTGATATTGCCCGTGGCAACAGCAACAGTTGAAAGA
GCATTCTCTGCTATGAATATTATCAAGACCGACAGGAGGAATAAAATGAA
TGATGATTGGATGAATAATAGCATGATATGCTATATTGAGCGGGATTTAT
TTGCATCTATTGAAGATGATAAAATTTTAAAGCGCTTTCAAGGCTTAAGA
AATCGTAAGATAAACTTGCCACCCAAGGTCCCAAGCATTGAGCGTGGCGG
TTCAAGTGGTATTGGTTCAAGTGGTGTGAATTCTTGA
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