Sh_014B07_contig-1_t000040

Overview
NameSh_014B07_contig-1_t000040
Unique NameSh_014B07_contig-1_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length732
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_014B07_contig-1contigSh_014B07_contig-1:39128..44083
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Note5S rRNA binding protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_014B07_contig-1_g000040Sh_014B07_contig-1_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_014B07_contig-1_p000040Sh_014B07_contig-1_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_014B07_contig-1_t000040 ID=Sh_014B07_contig-1_t000040|Name=Sh_014B07_contig-1_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=732bp
ATGGCGCAGTTTCTCCGCGGCAAGGCCGCCGCCGCCGCCGCCGCCGGGGA
GGCGGCGCTCCGCGCGTCGGCTCCGGTGCCGTGGCGGCGGACGGCCTCTG
CGTCGTACCACCACACGATCCAGGCTGTACCGCGGGAGACGGCCGGCCCG
CGCGCCGCGGCGCGCGAGCGCCGCCACGGCCGCGTCCCGGCGGTCCTGCT
CACGCTCGCGGGCGCCGCGCCCGGGAACGGAATCGCCCACCGGCAGCTCC
TCACCGCCGACAGGAGGCAGCTCGCGGAGATGCTCAAGCAGTCGCCCTAC
TTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCGGGCGAGCGATCCAA
CGCCATCATCCACGACGGCACCGTCCTCCCCATCAAGGTGCATCGATATG
GAACTGGGAATATATTGAACTTGGTAATGGTGAAGGCAGGTGAAGGAACA
ATGCTGAAGGTGGATTTGCCTGTAGAGTTCAAGGGGGAGGATGCTTGCCC
TGGGTTGAAGAAAGGAGGCTTTTTGCAGAAAATAAGGACCAGCCTGGTGT
ATCTCTGCCCAGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGACA
AATCTTGATGTTGGAGATAGGGTATTAATGCATGACATTCCAGTCCATCC
ATCGCTCAAGTTGCTGAGTAAAAACGAGACCATGCCCATCTGCAAGATCT
TGGCCTCAAAGCCAATTGAACCAGTCGAGTAG
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protein sequence of Sh_014B07_contig-1_p000040

>Sh_014B07_contig-1_p000040 ID=Sh_014B07_contig-1_p000040|Name=Sh_014B07_contig-1_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=244bp
MAQFLRGKAAAAAAAGEAALRASAPVPWRRTASASYHHTIQAVPRETAGP
RAAARERRHGRVPAVLLTLAGAAPGNGIAHRQLLTADRRQLAEMLKQSPY
FLSTPVRLQVRAGERSNAIIHDGTVLPIKVHRYGTGNILNLVMVKAGEGT
MLKVDLPVEFKGEDACPGLKKGGFLQKIRTSLVYLCPAEHIPPKIEVDLT
NLDVGDRVLMHDIPVHPSLKLLSKNETMPICKILASKPIEPVE*
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mRNA from alignment at Sh_014B07_contig-1:39128..44083+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_014B07_contig-1_t000040 ID=Sh_014B07_contig-1_t000040|Name=Sh_014B07_contig-1_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=4956bp|location=Sequence derived from alignment at Sh_014B07_contig-1:39128..44083+ (R570 Sugarcane cultivar)
ATGGCGCAGTTTCTCCGCGGCAAGGCCGCCGCCGCCGCCGCCGCCGGGGA GGCGGCGCTCCGCGCGTCGGCTCCGGTGCCGTGGCGGCGGACGGCCTCTG CGTCGTACCACCACACGATCCAGGCTGTACCGCGGGAGACGGCCGGCCCG CGCGCCGCGGCGCGCGAGCGCCGCCACGGCCGCGTCCCGGCGGTCCTGCT CACGCTCGCGGGCGCCGCGCCCGGGAACGGAATCGCCCACCGGCAGCTCC TCACCGCCGACAGGAGGCAGCTCGCGGAGATGCTCAAGCAGTCGCCCTAC TTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCGGGCGAGCGATCCAA CGCCATCATCCACGACGGCACCGTCCTCCCCATCAAGGTAACTCAAATTT TCTCGTATTCCCACCAAATATTGCATCCATTGCCTGCATTGCACATGGAA ATAGAAGTAGCTTCTTTGGGCTTAGTCGGCTGAGATTGAGAGCTGCTTAT CTGCTCAGCTTGTGTTTGTGGAAATGCTCCTTAGTGAAAATGTTGCTCGC TAATGATGATCCCTAAATGGTAGAGAGACACTGATGAAAATGTGCTTTTA GCCGTATGTCTTTGCAGTAATCGTCTATGTTGTCCATGTAGGATGTCTGA ATTATTTGTCATGCCACACGCTGCAGTTGATGTATCTGCTCTTTGTGTGC AGGTGCATCGATATGGAACTGGGAATATATTGAACTTGGTAATGGTGAAG GCAGGTGAAGGAACAATGCTGAAGGTGGATTTGCCTGTAGAGTTCAAGGG GGAGGATGCTTGCCCTGGGTTGAAGAAAGGTATCACTTTTTTCTTATTCT TTTTTTTTTCAATACTTGTTTGCTACGCTCAGCATACTAGTGTACATGAC AAGGGAATCTAGAAACATGCTGTTTCAATAGTGAACACATACTTTGAAGT CGTCTTGCATCGCTTAAGTAGCATGGCTGTGGCCTATGTGAGAAATATCA GTTACAGTCGCAAGCTCTTGATTCATCTGGTACTTGTTGAAATTCTCTTT GATCTTTTGTTATTGTTGATGTGCTGTGAAGAGAACGGACTTCGGTATAG AAGTTTATTTGGCATTCGTCGTTGGTGAGTCCATTTTTCAATAATGAAAT TATGAAAACACATGCAGATCGTTTTCTTCCCCATGTGTATACCCAGTTGC CCAAATACTATGGTTACTTGAAAACAGTAAGTCATGTAGTTGGTGCAATT GCATAACTGGTGGTCTGGCACTCGTTTTCTCACTGTTGCATTACACTGAT AAAATTTCTGGACTTCTCGTGCTTCCTAGCTTAATAGGCAGTGAAGACTG ACAATTTGGATGTGGCCTATCATCTGTTTTGTTTCTCAAAGTACTATCAC ATGTGAAAAAAGTGTGTTTCTTAAAAGGACCTTTTCATATAGATAGCATC TAGGATATTCGATGTTTTTTGATCTAGGATTCCCTATCTAGTCATGTAGA GTTGATGGCAGAGTTTGTTGTAGTGTTTCTCTACCTTTCTGGGGTTGTTG GAAATCATAGTATCAGGCTCTGCAATTACATGAAATGCTAAGCTTAAGAT TGTTTCCATGTTGGCGTTGATTTCAGGGGGGCAAATATGTGTTTACGATT ATAGTTCAGAACATATGTTGCGTATGAAATAATATATCATCTTACCTATA CTTAATTTATAAATAAAAATTAGAAACTGTACTGGCACTTTGAAGTAACT GGTCATCTTGCAGTTGACCAATGGGGTATGTAAATCTTGAGCCTGGTAGC ATGGGCATTCGAAGGGGAACTGAAGAAATGTAAAACATGACTTCTTTCAG TGGTGCTTGAGTTTTTATGAGCCCATAAGGCCATAACTGAATGGGAAGAT TGGGATTGCTACCAAATACTTATTTCCTTGTAATCTTGTCTAGAATGTCA TGCAAGAAGAATGAGAATTGACTCAAAAAATAGTTTGTTCAAAGTCTTAA ATTAAACTAGTTAGGTCCTTTAAAACAAGTATATCACTAATGCCGTAATT GCAGGGTCTGCCAAAATTACTTTTTTCCTTAATTTTGGGATAACTTGAAA TCAGTTGGCACTGTTTTGTAAGATGTTGACAGATCACAAAGCAACCAACT TTTATTCTCTGCGGTAAGCAGGCAGAACCCAGTTTGATTTTATTTACCAG ATTACAGACTCCTTTCTGTTATCTGAATCCATTCATGTGTAAACAACTTT CCCACCCCAAGATTGGTTGAGTGTACTGTAGGGAAGTACTGAGTAAACAG CATGCAGTATCTACCTACTTTGTTTCTTTATCTTTTGTGAAGACATCGCC CATGTAAATACCAATTATCTTTCTCAGAGCAACTCCAAGAGCCTCTATAA ATTTCAATCTCTATATCTCTGTTTGGACAGTCATTCAACGAATATTCTCT TTGTATGTCTCTCATGTCTCCAACAGACTTGGCAATTTTTGTTATCTGTA CTTTAATAGTTTATCATAATTTTTCGTGTGTGAAAAATTTCATGAGAAAA CTACCATCTATTGTATTTAGAGAGTCATGTAGCCTCTCCAAAAGTGGAGA GCGAGAAGGGTGGTTTTGGAGAGTGGAAAAGATGGAGAGTGATTTGGAGA GTCTATTGGAACATTTTTTTTTTGGTTTGTTTCCTAAATTTTGTGATAAA GAGCTATATAGAGAGTCTCCAGGAGATGCTCTTAGGATACCAAGGAAAAC CACACCTTGATTAGTAAGTATACCCAAAAAAACCATGCCTTGATTATTCA GTAAGGACAAATGACTATAAAAGTTCCACAGTAAGATTATTATGGCGTTT GAATAGCTTTGTCCTAATTCATGGACACATTTGAGTTATGTAAGTTCTGT ATCAGTATACTGTTCTAGGCATCTTAATAGTAATTTTGATGCTCCTCCGT TTCTACAAGGCACGTGTATTCTCTGTAATTTACTTCTGCATCAATTGTGG TCCTGGCCTGGTGTCGTTTGTCATTGTTTGTATCGAAACATCTGGTATAA GATATCAACCATGACTTTGGTACTTCTGCAATGATAAACTGCAATCAATA GGTCCCAAATGTGCCGCTGATATGAAAGACTTGTCGATTGTGAGAGGGAC AACTTCCTGTACTTGATTTTCACTGACCTGAATGCCAACTTGAATGTGCG TATTTGCCTTTAGAAGCCACATAGGGGCTTCTTGAGAAAGCTTGGGTCCA AGGGTGCCCTCATGCTTTTCAGTACAAGTGTTGTTTAGTCTTATCTGGGA AGCCAACATCATTGCTGCATCTATGATGTCATAAGTTCATCGTATTTAGC GCCCAAGATTCCTCAAGCTTGTCCTGATTTTTTAAGGGCGTTTCAGGTTA GTGCCAAATTGGCTATAGTAAAAAAGAATGAAAAAAAACATGTCAGAAAT CATACAGCTCACAGTTGCAATGCACAGTAGATCAACACTCAGAGTCAGGG TAGGACATGCTAGTTGGCACATCTGTTCAAAATATTACTAGTCAGTGTCT CCTTGCTTTTTGCATTTATCAGTTTCCTGAGTTACTTGAACTCTATGTAC ATCTACTTCTAGGGTTTGAAGTCTGTATTAGTAAGGTGTTGTTTAATGCT TGTTTGGCTCATTAACTGACGTACGTGATGTTTACTACCTTCTGTCAGAC TCAAGTGTTGCTTTTGACTTTTTGGAGTCTTCATGATTTTATGTCGAGTG TTGGTTTGTACAATCCAATCACGTATTCAAGTTGTAAAATAAAGACTATG AAATAGACTTTTATTAGTTTGATGTGGCGAATCTAAAGATTACATAGATG TTAATGTTATTACTTGAAGTTGCTTGGTTCAAATTTCACGCTTTCCATTG GCACCTTCTATTGGCCAGTTGAGACTACATAACTTGCAGTTTGGTGGCAG TGACCATTCATCTGGCTGCAGTATTTGATAATTCATTTGGTACTCACTCG AAGTTTAGTTTTCTCTGGACCCCAGCGCGATGCGTACAATTTGCCACCTA AAAAATACCTGTCTGCATACGTGCAGCTAGAGTATGTGATGATCAGTTCA TCACAATCTTCTTTTCTTTCTTAGGTACAACTATACAAACCTGAAGAACA CACATGTAACTAGTTATAAGGCAGGTACCCTGACAAGTTAAGTATCTGCA GCAACTCATCGCCTTTTTATGTGTATTGCCTAGTTCATGCTATCTTATTG TTTGATTATGTAATTTGCTATTATATTGCTTGCTTTGAGTTCTTGACCTG ACTATCAAATTGGTTTGATATCGCAGGAGGCTTTTTGCAGAAAATAAGGA CCAGCCTGGTGTATCTCTGCCCAGCTGAGCACATCCCTCCAAAAATTGAG GTGGACCTGACAAATCTTGATGTTGGAGATAGGGTATTAATGCATGACAT TCCAGTCCATCCATCGCTCAAGTTGCTGAGTAAAAACGAGACCATGCCCA TCTGCAAGATCTTGGCCTCAAAGCCAATTGAACCAGTCGAGTAGGCAGCA CTGCAAATATTTCAGAGTTGATAACATTGTACCTTTGGGTGGACAGCCCT CCAGCAGCTCCATTACTTGGATTGCTTTTTGGTTATCCGTACCCCAGGTT TCAATGTGATAGTGGATTCAGACAAGCTATGGGCTTCAAGTAAAGATATG AAGGAACAAAGAAACCTTGTCTGTACCAGCCACTATAGAATAACATCCTT TCTCTTTCAGTTTGGGTTCAGGGACACATGACATGTAATAAGACATTGTG GACTATCCTTTGCTGTGGCCTGGGTGAATTGATTCTCTGGGCTTGGTGGT GTTTTGAAACTGTAAGCTACCTACTCTTGCAAGGGCTCACGATTCATCGT TCTGACTGCATGCATGGTACTGTCATGATCTTACGTATTGAATGTTGTAT TCACGT
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Coding sequence (CDS) from alignment at Sh_014B07_contig-1:39128..44083+

>Sh_014B07_contig-1_t000040 ID=Sh_014B07_contig-1_t000040|Name=Sh_014B07_contig-1_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=732bp|location=Sequence derived from alignment at Sh_014B07_contig-1:39128..44083+ (R570 Sugarcane cultivar)
ATGGCGCAGTTTCTCCGCGGCAAGGCCGCCGCCGCCGCCGCCGCCGGGGA
GGCGGCGCTCCGCGCGTCGGCTCCGGTGCCGTGGCGGCGGACGGCCTCTG
CGTCGTACCACCACACGATCCAGGCTGTACCGCGGGAGACGGCCGGCCCG
CGCGCCGCGGCGCGCGAGCGCCGCCACGGCCGCGTCCCGGCGGTCCTGCT
CACGCTCGCGGGCGCCGCGCCCGGGAACGGAATCGCCCACCGGCAGCTCC
TCACCGCCGACAGGAGGCAGCTCGCGGAGATGCTCAAGCAGTCGCCCTAC
TTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCGGGCGAGCGATCCAA
CGCCATCATCCACGACGGCACCGTCCTCCCCATCAAGGTGCATCGATATG
GAACTGGGAATATATTGAACTTGGTAATGGTGAAGGCAGGTGAAGGAACA
ATGCTGAAGGTGGATTTGCCTGTAGAGTTCAAGGGGGAGGATGCTTGCCC
TGGGTTGAAGAAAGGAGGCTTTTTGCAGAAAATAAGGACCAGCCTGGTGT
ATCTCTGCCCAGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGACA
AATCTTGATGTTGGAGATAGGGTATTAATGCATGACATTCCAGTCCATCC
ATCGCTCAAGTTGCTGAGTAAAAACGAGACCATGCCCATCTGCAAGATCT
TGGCCTCAAAGCCAATTGAACCAGTCGAGTAG
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