Sh_014D12_t000060

Overview
NameSh_014D12_t000060
Unique NameSh_014D12_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_014D12contigSh_014D12:94999..96321
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Chromosome chr19 scaffold_4, whole genome shotgun sequence
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_014D12_g000060Sh_014D12_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_014D12_p000060Sh_014D12_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_014D12_t000060 ID=Sh_014D12_t000060|Name=Sh_014D12_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=351bp
ATGCTGGAGAGCCAGGCGGTGATCGGGGACACGGACATGCGGCAGGCGAT
GCAGCAGGACGCGCTCCGGCTGGCCGGGAAGGCGCTGGACGACTTCGAGG
CCGCCGACTCCACCGAGATCGCGCGGTTCATCAAGAAGGAGTTCGACCGG
TCGTACGGGGCCGGATGGCAGTGCATCGTGGGCACCGACTTCGGGTCGTT
CGTGACGCACCACTCCGGCTGCTTCATCTACTTCGGCATCGGCAACCTGG
CCATCCTGCTGTTCAAGGGCGGCGCCGGCGTGGCTGCTCACGGTGAGACC
ATCGCGGAGCAGGCACGGCTCACGGCGCTGAAAGCTGCCGTTGAGGCGTG
A
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protein sequence of Sh_014D12_p000060

>Sh_014D12_p000060 ID=Sh_014D12_p000060|Name=Sh_014D12_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=117bp
MLESQAVIGDTDMRQAMQQDALRLAGKALDDFEAADSTEIARFIKKEFDR
SYGAGWQCIVGTDFGSFVTHHSGCFIYFGIGNLAILLFKGGAGVAAHGET
IAEQARLTALKAAVEA*
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mRNA from alignment at Sh_014D12:94999..96321-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_014D12_t000060 ID=Sh_014D12_t000060|Name=Sh_014D12_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=1323bp|location=Sequence derived from alignment at Sh_014D12:94999..96321- (R570 Sugarcane cultivar)
GTACGCTTTTCACACCCTGCTGCTAGCCGAGCCACTAACGTCGAGGCGCG GCCGTCATTGCCACCTGGCAAGCTGCCGGCGATACCTAGCTAATCCGCTT GATATATCCAATTCCACCGTGAAATCCCAGCTCGGCGCGCCTATTCGCTA GAGGCTATATAACCAGCTGACCGGCGGAACGCAGTGCCTGTTTTCACCAT AACTGCATTGTGCGCATCAGCATTCAGCGGGTACAGCCTTTCCCTCCCAG CAAGGCGGCGAGGATGCTGGAGAGCCAGGCGGTGATCGGGGACACGGACA TGCGGCAGGCGATGCAGCAGGACGCGCTCCGGCTGGCCGGGAAGGCGCTG GACGACTTCGAGGCCGCCGACTCCACCGAGATCGCGCGGTTCATCAAGAA GGTCTGGCGACCGTCTGTTCTTGTAATAACCAACACTGAACATTGCAGAA GTGTGCTGATTCAGAATATATAGCTCTGAGTCCTGATGATGATGCGTCAT CTTTTGCAGGAGTTCGACCGGTCGTACGGGGCCGGATGGCAGTGCATCGT GGGCACCGACTTCGGGTCGTTCGTGACGCACCACTCCGGCTGCTTCATCT ACTTCGGCATCGGCAACCTGGCCATCCTGCTGTTCAAGGGCGGCGCCGGC GTGGCTGCTCACGGTGAGACCATCGCGGAGCAGGCACGGCTCACGGCGCT GAAAGCTGCCGTTGAGGCGTGAGGGGATGATCGATGATGGGTGTGTGCAG GGTAGTAAAGTTTTTGTTTGCGTGGCTTTGTCCTACGCCCTGTTTAGTTT CTAAAATTTTATAAATTTTTTTAAGATTTCTTGTCACATCGAATCTTTGA AGTATGCATGAAACATTAAATATAGATAAAAAATAAAACTAATTACACAG TTTAGACGAAATTCACGAGACAAATCTTTTAAGCCTAATTAGATTATGAT TGGACACTAATTGTCAAATAACAATGAAAGCGCTACACTACCGGTTTCCA AAATATTTCGCGAACTAAACAGGCTCCTAGCATGTAAGCTCGTGCTTGCC GGATGAAAGAGGCCTGACTTACAAGGGGATGAAAAGTGCAGGTCTTCACA TAGTAAAAACCGTTGCTCTCACGGCATGTCTGCTGGGTGCTAGGTAGACA GTGATGGCAAATAGTGGAATATTGCGTACCTTTTGACGGTAACTATCAAA TTTACTATCTTCAGTCCTCGAGCTTTTATTTTGAGCTCAATCTAGTCCCT CGTCCTACATGTCACGCCACGCTGACGGGCTTGTCAACAATGCTTAAAGC TAAGCTCACCTGTGGTTCATCAA
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Coding sequence (CDS) from alignment at Sh_014D12:94999..96321-

>Sh_014D12_t000060 ID=Sh_014D12_t000060|Name=Sh_014D12_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=351bp|location=Sequence derived from alignment at Sh_014D12:94999..96321- (R570 Sugarcane cultivar)
ATGCTGGAGAGCCAGGCGGTGATCGGGGACACGGACATGCGGCAGGCGAT
GCAGCAGGACGCGCTCCGGCTGGCCGGGAAGGCGCTGGACGACTTCGAGG
CCGCCGACTCCACCGAGATCGCGCGGTTCATCAAGAAGGAGTTCGACCGG
TCGTACGGGGCCGGATGGCAGTGCATCGTGGGCACCGACTTCGGGTCGTT
CGTGACGCACCACTCCGGCTGCTTCATCTACTTCGGCATCGGCAACCTGG
CCATCCTGCTGTTCAAGGGCGGCGCCGGCGTGGCTGCTCACGGTGAGACC
ATCGCGGAGCAGGCACGGCTCACGGCGCTGAAAGCTGCCGTTGAGGCGTG
A
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