Genomes
Erianthus rufipilus
(Wang et.al 2023)Erianthus fulvus / E. rufipilus (2n=2x=20) is, so far, read more
Modern cultivar R570
(Healey et al. 2024)R570 is a modern cultivar obtained by eRcane breeding program in read more
Saccharum officinarum
LA Purple (unpublished)LA Purple is a S. officinarum octoploid accession (2n=8x=80, x=10 read more
Saccharum spontaneum
AP85-441 (Zhang et al 2018)AP85-441 is a S. spontaneum tetraploid (2n=4x=32, x=8) obtained read more
Saccharum spontaneum
Np-X (Zhang et al 2022)Np-X is a S. spontaneum tetraploid accession (2n=4x=40, x=10) that read more
Chromosome nomenclature
Initially, sugarcane chromosome nomenclature in assemblies was generally based on sorghum. However, because three basic chromosome numbers (x=10, x=9 and, x=8) coexist in Saccharum, we established a new chromosome nomenclature that is no longer sorghum-based but optimizes intra-Saccharum chromosome numbers correspondence.
Reference: D’Hont A, Garsmeur O and Piperidis N. (2023). Sugarcane genome architecture revealed by chromosome-specific probes, implication for chromosome nomenclature. Proceedings of the International Society of Sugarcane Technologists (ISSCT), Volume 31.
Tools
Gene Search
Search for a gene by name, location, functional annotation keywords...
Crispor Tefor
CRISPOR is a program that helps design, evaluate and clone guide sequences for the CRISPR/Cas9 system.
Primer Designer
Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.
Primer Blaster
This tool was designed to test the specificity of any primer pair on the genome by using BLAST.
JBrowse
Visualize data using an interactive genome browser.
Synteny Search
Retrieve all syntenic blocks and genes for your regions of interest
Blast Search
Search for highest similarity for your sequence of interest.
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