Erianthus fulvus / E. rufipilus (2n=2x=20) is, so far, read more
R570 is a modern cultivar obtained by eRcane breeding program in read more
LA Purple is a S. officinarum octoploid accession (2n=8x=80, x=10 read more
AP85-441 is a S. spontaneum tetraploid (2n=4x=32, x=8) obtained read more
Np-X is a S. spontaneum tetraploid accession (2n=4x=40, x=10) that read more
Initially, sugarcane chromosome nomenclature in assemblies was generally based on sorghum. However, because three basic chromosome numbers (x=10, x=9 and, x=8) coexist in Saccharum, we established a new chromosome nomenclature that is no longer sorghum-based but optimizes intra-Saccharum chromosome numbers correspondence.
Reference: D’Hont A, Garsmeur O and Piperidis N. (2023). Sugarcane genome architecture revealed by chromosome-specific probes, implication for chromosome nomenclature. Proceedings of the International Society of Sugarcane Technologists (ISSCT), Volume 31.
Search for a gene by name, location, functional annotation keywords...
CRISPOR is a program that helps design, evaluate and clone guide sequences for the CRISPR/Cas9 system.
Primer Designer allows users to design new target-specific primers in one step as well as to check the specificity of pre-existing primers with BLAST.
This tool was designed to test the specificity of any primer pair on the genome by using BLAST.
Visualize data using an interactive genome browser.
Retrieve all syntenic blocks and genes for your regions of interest
Search for highest similarity for your sequence of interest.